Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0839 ATGGCTGCAACTTCTGGTACTGTGCTTAATGGCTTGGGCTCACCCTTCCTCCGTGGAGGTAGCAGAACTCAGACCTTGTTGGCCGGAGCCAGAGGTGGTGTCAATGTTGTCGGCTCTCGTAAGCTTGTTGTCGTCGCGGCTGCTCAGCCCAAGAAGTCTTGGATCCCTGCTGTTAAGGGTGGCGGCAACTTGATCGACCCAGAATGGCTTGATGGCTCACTTCCAGGCGACTACGGCTTCGACCCACTAGGGTTGGGGAAGGACCCAGCCTTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTAGGACAAGCGTGGAGTGGGATTCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATCGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAAGCGGTGGAATGGGCGACGCCATGGTCGAGAACAGCAGAGAACTTCGCAAATGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGAGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAGCATGCTAGAATCGCTATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACGCCATTGGGTGCTCTTGGATTGTAA 768 53.12 MAATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKGGGNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18416040 18417156 + ClG42_08g0083900.10 Clacu08g0839 255181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0839 255 FunFam Chlorophyll a-b binding protein, chloroplastic 67 254 - -
Clacu08g0839 255 Pfam Chlorophyll A-B binding protein 67 243 IPR022796 -
Clacu08g0839 255 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 51 253 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Clacu08g0839 255 SUPERFAMILY Chlorophyll a-b binding protein 62 255 - -
Clacu08g0839 255 Gene3D Chlorophyll a/b binding protein domain 67 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0839 Clacu-Chr8:18416040 Clacu08g1753 Clacu-Chr8:26947822 4.10E-31 dispersed
Clacu08g0839 Clacu-Chr8:18416040 Clacu04g0770 Clacu-Chr4:22014047 5.80E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0839 K08917 - csv:101204705 502.671