Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0841 ATGATGGATTTGAACTTTACCTCCCGGAAGCCACCGCAGACGGCGCCGAGGATGGACATCGAACAGATGCCGGAGGCTCCACACCGTGGGTATCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCTAATTTTGACGATCTCCTCCTCTTCGACCCTCCCGACATCGATTTATCATCTGCTCTTCCTTCTCCCTCGCCGTCACCGTCTCCGACGCCGTCAGGGGCTCGTATGGCCGTCGATTCCTTCAACTCGAGGTCCCCTGAAGACGTCTCTGACACAAAACCTAGGGCTGGAAACGGTAACTCCGCTTCCTTCTTCAGTTCTCACTACCGGAGCTTGTCGATGGACTCCGACTTCTTTGAGGGATTGGGGATGGCCGGAGATGGGAGTGACGGTGAAGTACTTGGCGGGAGAGTGACGGCGGGGGAGAAGAAGATGAGTCGCCATAGGCATAGCAATTCCATGGATGGGTCTTTGACCTCCTCGTTTGAAGCTAATTCCACCAAGAAAGCCATGGCACCTGATAAACTCGCTGAGCTTGCTTTGATGGACCCTAAAAGAGCTAAGAGGATTCTGGCAAATAGACAATCAGCTGCACGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGATGCTTCAGTCAGAAGCCACTTCCCTTTCTGCTCAGGTCACAGTGTTACAGAGAGATACCACTGGATTGACTACTGAGAACAGAGAACTCAAGCTAAGGTTGCAAGCCATGGAGCAGCAAGCCCATCTGAGGGATGCTTTGAATGAGACACTGAAGGAGGAAGTGCAGCGGCTTAAGATAGTTGCGGCCCAACTGCCTGTTGCAAATGGCAACTCATTCAACATTAGAGGAGTGCTACCTCCTCAATTCCCTCCTCTCCAAACATCATCATTGCTTCAATTTGGCAACTCCCAGAATCATCATCAACAGCCACAACTGCTTCACATGTCTCAGCCTGATGCTCGGGGAGGGTCTCCCCCGTCCCAGCCTCCCGGAGTTTAA 1041 52.26 MMDLNFTSRKPPQTAPRMDIEQMPEAPHRGYHHRRSHSDTSFRFANFDDLLLFDPPDIDLSSALPSPSPSPSPTPSGARMAVDSFNSRSPEDVSDTKPRAGNGNSASFFSSHYRSLSMDSDFFEGLGMAGDGSDGEVLGGRVTAGEKKMSRHRHSNSMDGSLTSSFEANSTKKAMAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQMLQSEATSLSAQVTVLQRDTTGLTTENRELKLRLQAMEQQAHLRDALNETLKEEVQRLKIVAAQLPVANGNSFNIRGVLPPQFPPLQTSSLLQFGNSQNHHQQPQLLHMSQPDARGGSPPSQPPGV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18442680 18444328 - ClG42_08g0084100.10 Clacu08g0841 255183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0841 346 Pfam bZIP transcription factor 189 245 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0841 346 MobiDBLite consensus disorder prediction 75 89 - -
Clacu08g0841 346 MobiDBLite consensus disorder prediction 61 106 - -
Clacu08g0841 346 CDD bZIP_plant_RF2 190 239 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0841 346 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0841 346 MobiDBLite consensus disorder prediction 315 329 - -
Clacu08g0841 346 MobiDBLite consensus disorder prediction 1 37 - -
Clacu08g0841 346 SMART brlzneu 185 249 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0841 346 Gene3D - 188 241 - -
Clacu08g0841 346 SUPERFAMILY Leucine zipper domain 189 241 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g0841 346 MobiDBLite consensus disorder prediction 315 346 - -
Clacu08g0841 346 FunFam Transcription factor VIP1 188 241 - -
Clacu08g0841 346 Coils Coil 212 232 - -
Clacu08g0841 346 Coils Coil 240 260 - -
Clacu08g0841 346 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 329 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0484 Clacu-Chr2:4334410 Clacu08g0841 Clacu-Chr8:18442680 5.80E-42 dispersed
Clacu02g0485 Clacu-Chr2:4346630 Clacu08g0841 Clacu-Chr8:18442680 2.20E-40 dispersed
Clacu07g0525 Clacu-Chr7:6715184 Clacu08g0841 Clacu-Chr8:18442680 2.50E-50 dispersed
Clacu08g0841 Clacu-Chr8:18442680 Clacu09g0965 Clacu-Chr9:9062937 2.20E-88 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48147 PF00170 bZIP_1 2.50E-07 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0841 K20557 - csv:101215277 494.967