Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0848 ATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGGCCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCGTTGGGCTAGCCTTCCCCCCGAATTATTATGTGACGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAAGAAATGGTCAAAAGCCCTGAGTTGTCTGGGAAAATTACCTTCCCAATCGCCTTGAAGCAGCCTGGGCCGCGTGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCCAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGGACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATTTCAAGATCAAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTAGGAACCAAGTTCATTATATATGATACACAGCCTCCTTACAACAGCAACCAAATCCCGACCCTCGGGCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCACCTAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATATGAGTTGAATGTATTAGGTACGAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCCGAGCTCAATCCTCGCCCCCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCAACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCAGGAATGCTTGTTGACGAAGATGGCGATGTGAAGGATGGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTGATCGCTGCAACCTCACCTGCTGCAGAAGCCCCCATACCGTCGCAGCCGCCTCCTCAGCCAGCCCAACCTACCCATTCTGACCACGACAAGATCATTCTTCAGTTCGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACAAAATTGGCATGTGAATAG 1299 47.04 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCKEMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEDGDVKDGPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPIPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18524482 18527008 + ClG42_08g0084800.10 Clacu08g0848 255190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0848 432 CDD F-box_AtTLP-like 53 97 - -
Clacu08g0848 432 MobiDBLite consensus disorder prediction 369 388 - -
Clacu08g0848 432 Gene3D - 48 103 - -
Clacu08g0848 432 FunFam Tubby-like F-box protein 110 432 - -
Clacu08g0848 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Clacu08g0848 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515(InterPro)
Clacu08g0848 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Clacu08g0848 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Clacu08g0848 432 PANTHER TUBBY-RELATED 40 431 - -
Clacu08g0848 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Clacu08g0848 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Clacu08g0848 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Clacu08g0848 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Clacu08g0848 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Clacu08g0848 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Clacu08g0848 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Clacu08g0848 432 Pfam Tub family 114 427 IPR000007 -
Clacu08g0848 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Clacu08g0848 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2058 Clacu-Chr5:29510734 Clacu08g0848 Clacu-Chr8:18524482 1.90E-118 dispersed
Clacu07g1025 Clacu-Chr7:24673048 Clacu08g0848 Clacu-Chr8:18524482 2.60E-98 dispersed
Clacu08g0497 Clacu-Chr8:8779629 Clacu08g0848 Clacu-Chr8:18524482 9.30E-201 dispersed
Clacu08g0848 Clacu-Chr8:18524482 Clacu09g0346 Clacu-Chr9:2985954 2.30E-10 dispersed
Clacu08g0848 Clacu-Chr8:18524482 Clacu05g0667 Clacu-Chr5:5615677 1.10E-119 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48149 PF01167 Tub 1.10E-115 CL0395 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0848 K19600 - csv:101203074 851.277