Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0866 ATGGCGGCTACAGCTCCGGCACCGGCGACGGCCGCTTCAGTTCAAACGGCGGCGATTCCTCCTTCGACAGGCTCTGTGGCCACTGGAGGCGGGTTTTTGAGTTCCTCATTGTATGTAGGCGATCTGGACCAGAGCGTGAACGAGGGACAGCTTTTGGAACTGTTCGGCCAAGTGGCTCAGGTTGTTTCCATTAGGGTTTGCAGGGATCAGACACGTAGGCAATCGCTTGGATATGCTTATGTTAATTTTAGCAGCCATCAGGATGCTGTCAACGCCATGGAACATTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATCTCTAATCGAGATCCTAGCATTCGAAAAAGTGGTTATGGAAATGTTTTTATCAAAAATCTAGATACATCCATTGATAACAAGGCATTACATGATACATTTGCTACTTTTGGTACTGTCCTTTCTTGTAAAGTTGCGGTTGATAGCAATGGTCAATCAAAAGGTTATGGATTTGTGCAATTTGAAACTGAGGAGTCGGCCGAAAGTTCCATATTAAGGTTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTTGGACATTTCATTCGACACCAAGAAAGGATTCGAGCAAACGGATCGCAGTTTACTAATGTTTATGTGAAAAACTTACCAGAAACTACCACTGATGATGACCTAAAAAATCTTTTTGCCGCACATGGTACCATTACCAGTGCTATTGTCATGACAGATTCAAATGGGAAGTCCAAATGTTTTGGTTTTGTGAACTTTCAGAACACAGAATCTGCTGCTGCTGCAGTTGAAAAGTTGAACGGTACTGTCTTGGGTGATGAGGATGATGACAAGATTTTGTACGTAGGCAGGGCTCAAAGGAAAGCAGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAAGAGCAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATCTTGATGATCATATTGATGATGAGAAGCTTAAAGAGTTATTCTCTGAGTATGGAACAATCACATCATGCAAGGTCATGCTTGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTTGCCTTTTCTTCGCCAGATGAAGCAACCAGAGCTTTAAATGAAATGAATGGAAAGATGAAAGGAAGAAAGCCTTTGTATGTGGCGGTTGCCCAGCGCAAAGAAGAAAGAAAGGCTCGGCTGCAGGCGCAATTTGCTCAAATTCGAGCAACAGGTGGAATATCGTCTTTGCCTTCCGGAATGGCAGGATTTCATCCTGGGCCACCTCGAGTTTCACCTCAACAGGTCTATTTTGGTCAAGGAAACCCTGGGCTAGTGCCTCCACAACCTGCCGGATATGGCTTCCAACCTCAACTCATGAGCGGTATGCGACCTAGTATGGGCCCAAACTTCCTCATGCCTTACCAGTTTCAAAGGCAAGGACAGGCCGGGCCACGCTCAGGGATGAGGCGAGGTGGAAATTCACAATCTGTACAGCAGCAGTTATTGCTTCGTGGCTCCGGACAAGGCTTTAGATACATGAACAATGCACGAAATGGAATAGAGCCGCCCGTCTTGCCCCAAGGTCTTGTTGGTCCAATGATGCCTCTAGCTTTTGATAGTTCTGGAATGTCTAGCTCCCCTATTGACATCCAACGATCAAGGGCCGTGCCTACTTCAACGCTCGCATCTGCATTAGCTTCTGCTACACTGGAAAACCAGCGTGTGATGCTGGGCGAGCAGTTGTATCCACTCGTGGAACGTCTTGAGCCAGGTCATGCAGCTAAGGTTACCGGAATGTTGCTGGAGATGGATCAACCAGAGGTGCTTCATCTCATCGAGTCACCTGATGACTTGAAGAGTAAAGTGGCTGAGGCAATGGAAGTCCTCCGCAAAGCTTCATCGGAACCCGAGCTTTCTGATCAGCTTGGTGCATTGGCCCTGACCAAATGA 1965 46.11 MAATAPAPATAASVQTAAIPPSTGSVATGGGFLSSSLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAMEHLNFTPVNGKPIRIMISNRDPSIRKSGYGNVFIKNLDTSIDNKALHDTFATFGTVLSCKVAVDSNGQSKGYGFVQFETEESAESSILRLNGMLLNDKQVYVGHFIRHQERIRANGSQFTNVYVKNLPETTTDDDLKNLFAAHGTITSAIVMTDSNGKSKCFGFVNFQNTESAAAAVEKLNGTVLGDEDDDKILYVGRAQRKAEREAELKAKFEQERKSRFEKLQGANLYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQIRATGGISSLPSGMAGFHPGPPRVSPQQVYFGQGNPGLVPPQPAGYGFQPQLMSGMRPSMGPNFLMPYQFQRQGQAGPRSGMRRGGNSQSVQQQLLLRGSGQGFRYMNNARNGIEPPVLPQGLVGPMMPLAFDSSGMSSSPIDIQRSRAVPTSTLASALASATLENQRVMLGEQLYPLVERLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKSKVAEAMEVLRKASSEPELSDQLGALALTK 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18741272 18744348 + ClG42_08g0086600.10 Clacu08g0866 255208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0866 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 294 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 397 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 CDD RRM4_I_PABPs 319 397 - -
Clacu08g0866 654 PANTHER RNA BINDING PROTEIN 23 218 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Clacu08g0866 654 FunFam Polyadenylate-binding protein 303 408 - -
Clacu08g0866 654 FunFam Polyadenylate-binding protein 118 204 - -
Clacu08g0866 654 Gene3D - 33 123 IPR012677 -
Clacu08g0866 654 Coils Coil 289 309 - -
Clacu08g0866 654 SMART poly_2 574 637 IPR002004 GO:0003723(InterPro)
Clacu08g0866 654 Pfam Poly-adenylate binding protein, unique domain 569 634 IPR002004 GO:0003723(InterPro)
Clacu08g0866 654 Pfam RNA recognition motif 125 193 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 Pfam RNA recognition motif 215 280 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 Pfam RNA recognition motif 37 107 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 Pfam RNA recognition motif 322 390 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 SMART rrm2_1 124 196 IPR003954 GO:0003676(InterPro)
Clacu08g0866 654 SMART rrm2_1 321 392 IPR003954 GO:0003676(InterPro)
Clacu08g0866 654 SMART rrm2_1 214 281 IPR003954 GO:0003676(InterPro)
Clacu08g0866 654 SMART rrm2_1 36 109 IPR003954 GO:0003676(InterPro)
Clacu08g0866 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 Gene3D - 199 300 IPR012677 -
Clacu08g0866 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 635 IPR006515 GO:0003723(InterPro)
Clacu08g0866 654 CDD RRM3_I_PABPs 212 295 - -
Clacu08g0866 654 Gene3D - 301 406 IPR012677 -
Clacu08g0866 654 FunFam Polyadenylate-binding protein 558 640 - -
Clacu08g0866 654 SMART rrm1_1 36 109 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 SMART rrm1_1 124 196 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 SMART rrm1_1 214 290 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 SMART rrm1_1 321 393 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 SUPERFAMILY RNA-binding domain, RBD 212 400 IPR035979 GO:0003676(InterPro)
Clacu08g0866 654 Gene3D - 558 639 - -
Clacu08g0866 654 CDD RRM2_I_PABPs 121 197 IPR045305 -
Clacu08g0866 654 Gene3D - 124 197 IPR012677 -
Clacu08g0866 654 Coils Coil 395 415 - -
Clacu08g0866 654 FunFam Polyadenylate-binding protein 12 117 - -
Clacu08g0866 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723(InterPro)
Clacu08g0866 654 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676(InterPro)
Clacu08g0866 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 562 639 IPR002004 GO:0003723(InterPro)
Clacu08g0866 654 SUPERFAMILY PABC (PABP) domain 509 641 IPR036053 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0646 Clacu-Chr2:6432224 Clacu08g0866 Clacu-Chr8:18741272 9.70E-186 dispersed
Clacu05g1176 Clacu-Chr5:10813435 Clacu08g0866 Clacu-Chr8:18741272 1.10E-188 dispersed
Clacu08g0866 Clacu-Chr8:18741272 Clacu10g1937 Clacu-Chr10:32962940 1.00E-118 dispersed
Clacu08g0866 Clacu-Chr8:18741272 Clacu08g0869 Clacu-Chr8:18760493 6.70E-09 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0866 K13126 - csv:101219081 1150.58