Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0868 ATGGCAGTTCACTCTCACATTGAGAGAGTGCTCTGGAACCAGGACCAAATTTCGGCTCGAGTCTCAGACCTCGCCTCCCAAATCTCCGCCGCCTTCGCCGGAACCTCTTCGCCGCCCGTCCTCGTTGGCGTTGCCACCGGAGCCTTCATCTTCCTGGCCGACTTGGTCCGTCGCATCAGTCTTCCAATCGCTGTTGACTTCGTTCGTGTCGAATCTTACGGTTTCGGTACTCAGTCTAATGGTGCTCCAAGAATCTCATCGGACTTGAAGGTCGATGTTAAGAACAATCATGTAATTCTGGTTGAGGATATTGTAGACACTGGAAATACTTTATCATGTCTCATTGCTCACATGGAGGCAAAAGGAGCATCATCTATATCAGTATGCACTTTTCTTGATAAACCAACAAGACGAAAGGTGAATTTTCAGCTAGTAGGCGAAGGAAAGTTCTACCGTGGGTTTGAATGTCCAGATTATTTTGTGGTGGGCTATGGAATGGACTTCGCAGAGCTGTACAGAAATTTACCATATGTTGGCGTTTTGAAGCCTGAATGTTACCAGTGA 564 47.34 MAVHSHIERVLWNQDQISARVSDLASQISAAFAGTSSPPVLVGVATGAFIFLADLVRRISLPIAVDFVRVESYGFGTQSNGAPRISSDLKVDVKNNHVILVEDIVDTGNTLSCLIAHMEAKGASSISVCTFLDKPTRRKVNFQLVGEGKFYRGFECPDYFVVGYGMDFAELYRNLPYVGVLKPECYQ 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18749338 18752164 + ClG42_08g0086800.10 Clacu08g0868 255210

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0868 187 PANTHER HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE 4 184 IPR050408 GO:0000287(PANTHER)|GO:0004422(PANTHER)|GO:0005829(PANTHER)|GO:0006178(PANTHER)|GO:0032263(PANTHER)|GO:0032264(PANTHER)|GO:0046100(PANTHER)
Clacu08g0868 187 FunFam Hypoxanthine phosphoribosyltransferase 2 187 - -
Clacu08g0868 187 CDD PRTases_typeI 24 147 IPR000836 -
Clacu08g0868 187 Gene3D - 1 187 IPR029057 -
Clacu08g0868 187 SUPERFAMILY PRTase-like 3 186 IPR029057 -
Clacu08g0868 187 Pfam Phosphoribosyl transferase domain 14 168 IPR000836 -
Clacu08g0868 187 NCBIfam hypoxanthine phosphoribosyltransferase 10 182 IPR005904 GO:0004422(InterPro)|GO:0006166(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0868 K00760 - - csv:101219321 344.739
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Clacu10g0288 . 30 180 PRT Gene Family AT1G80050 74.8 7.0e-61 230.3
Clacu08g1498 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Clacu08g1803 . 110 259 PRT Gene Family AT1G80050 70.7 2.3e-56 215.3
Clacu08g1498 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Clacu01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Clacu08g1803 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Clacu10g0288 . 8 145 PRT Gene Family AT5G11160 71.0 6.2e-52 200.7
Clacu08g1803 . 81 262 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Clacu01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Clacu10g0288 . 1 180 PRT Gene Family AT1G27450 70.0 6.1e-69 257.3
Clacu08g1498 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Clacu11g0529 . 73 557 PRT Gene Family AT2G16570 85.2 5.8e-243 837.0
Clacu11g0529 . 73 557 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Clacu11g0529 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Clacu08g1803 . 81 262 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Clacu01g0394 . 7 180 PRT Gene Family AT1G27450 74.7 9.1e-73 270.0
Clacu10g0288 . 1 180 PRT Gene Family AT1G27450 70.0 6.1e-69 257.3
Clacu08g1498 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Clacu01g0394 . 30 180 PRT Gene Family AT1G80050 75.5 6.3e-62 233.8
Clacu10g0288 . 30 180 PRT Gene Family AT1G80050 74.8 7.0e-61 230.3
Clacu08g1498 . 33 168 PRT Gene Family AT1G80050 80.9 8.0e-57 216.9
Clacu08g1803 . 110 259 PRT Gene Family AT1G80050 70.7 2.3e-56 215.3
Clacu01g0394 . 6 104 PRT Gene Family AT4G22570 82.8 5.1e-44 173.7
Clacu10g0288 . 5 97 PRT Gene Family AT4G22570 84.9 1.7e-42 168.7
Clacu08g1803 . 86 177 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Clacu08g1498 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Clacu01g0394 . 1 96 PRT Gene Family AT4G12440 84.4 8.3e-41 162.9
Clacu10g0288 . 1 96 PRT Gene Family AT4G12440 82.3 2.7e-39 157.9
Clacu08g1803 . 81 176 PRT Gene Family AT4G12440 79.2 8.6e-38 152.9
Clacu08g1498 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Clacu08g1498 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Clacu01g0394 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Clacu08g1803 . 88 225 PRT Gene Family AT5G11160 73.9 6.0e-55 210.7
Clacu10g0288 . 8 145 PRT Gene Family AT5G11160 71.0 6.2e-52 200.7
Clacu08g0868 . 1 186 PRT Gene Family AT1G71750 65.0 1.7e-69 259.2
Clacu09g2180 . 98 550 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Clacu05g1337 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Clacu09g2180 . 147 555 PRT Gene Family AT3G27440 76.5 1.5e-184 642.5
Clacu05g1337 . 80 482 PRT Gene Family AT3G27440 75.4 8.8e-180 626.7
Clacu05g1337 . 1 482 PRT Gene Family AT3G27190 86.1 9.6e-247 849.4
Clacu09g2180 . 94 549 PRT Gene Family AT3G27190 75.5 6.7e-208 720.3
Clacu04g0832 . 3 288 PRT Gene Family AT3G53900 66.1 5.4e-107 384.4
Clacu09g2180 . 84 550 PRT Gene Family AT4G26510 84.7 6.5e-232 800.0
Clacu05g1337 . 11 482 PRT Gene Family AT4G26510 75.8 7.0e-210 726.9
Clacu05g1337 . 1 482 PRT Gene Family AT5G40870 86.3 9.7e-247 849.4
Clacu09g2180 . 94 552 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011220 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 30