Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0872 ATGGAAGGGGTAATCCATCAATTTCTTGAACGATGGCTGTTGTACGTTATAGCTATGTGCTTAAGCTTAATAATAGGTAGTTCATTAGTCGCTTCTCTCTCGCCTGATGGAGAAGCGCTTCTCTCTCTCATTGCTGCTACTGGTTCTTCTGTAGCATCATCTTCTTCTGTTCTTGCTTCTTGGAATCCATCTAGCCAAAACCCATGTGCTTGGGAAGGAATCACTTGCTCTCCTCAGAACAGAGTCATTTCACTATCTCTCCCTAAAACATTCCTAAACCTCTCGTTTTTGCCTCCTGAGTTGTCTTCTCTTTCTTCTCTGCAACTTCTTAATCTATCATCCACCAATGTATCTGGTTCAATCCCTCCTTCTTTTGGCCTACTCACCCATCTTCGCTTGTTGGACCTTTCTTCCAACAATCTCTATGGCCCTATTCCTCCTCAGCTTGGTTCTCTTTCTTCACTTCAATTCCTTTTCCTTAATTCCAATAGACTGTCTGGTAAGATTCCTCCTCAGCTTTCTAATCTGACTTCTCTGCAAAGTCTTTGCCTCCAAGACAATCAGTTTAACGGCTCCATACCATCGCAGTTTGGTTCTTTGCTGTCCCTCCAAGAGTTTCGAATAGGAGGGAATCCATATCTTTCTGGAGAAATTCCACCACAAATAGGGCTGCTTACGAACCTCACTACATTTGGGGCAGCGGCTACTGCTTTATCTGGGGCTATGCCGTCTACATTTGGGAACCTAATCAACCTCCAAACTTTGTCACTCTATGATACTGAGATGTCGGGTTCAATACCTCCTGAGTTGGGACTTTGTTCCGAGCTAAGGGATTTGTATTTACATATGAACAAGCTCACTGGTAATATTCCTCCTCAGCTGGGTCGGTTGCAGAAGCTAACTAGTTTGTTTCTATGGGGTAATGCTCTATCAGGGGCGATACCATCTGAAATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGAGAATGATCTTTCTGGGGAAATTCCAAGTGATTTGGGGAAGTTAGTTGTTCTTGAACAGTTTCATATATCTGACAATTCAATCTCGGGCTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTTCAGCTTGATAACAATCAATTATCAGGTGTAATTCCATCACAACTTGGCAATTTGAAATCCCTGCAAAGTTTTTTCTTATGGGGCAATTCTGTATCAGGAACTGTACCATCTTCCTTTGGCAACTGCACTGAGTTGTATGCCCTTGATCTTTCAAGAAATAAGCTCACTGGGATTATCCCAGAAGAAATTTTCGGCTTGAAGAAGTTGAGCAAGCTATTGCTCCTTGGAAATTCTTTATCTGGTGGGTTGCCTCAAAGTGTTGCGAATTGTCAATCATTGGTGAGGTTGAGGCTTGGAGAAAACCAGCTTTCAGGCCAGATTCCGAAGGAGGTAGGCCGGTTGCAAAATCTTGTCTTTCTTGACTTGTATATGAATCATTTTTCGGGTCGTCTTCCACCTGAGATTGCTAATATTACAGTTCTTGAGCTACTTGATGTGCATAATAATTATATAACCGGGGAAATTCCTCCCCAGCTTGGAGAATTGGTGAACTTGGAGCAGCTTGATCTCAGTCGAAACAGCTTCACTGGTGAAATTCCTCAGAGCTTTGGAAATTTCAGTTATTTGAATAAACTTATACTCAATAATAATCTACTGACAGGGTCAATCCCGAAGTCTATTAAGAACCTGGAGAAACTAACTCTACTTGATTTGAGTTGCAACAGTCTCTCTGGCACAATACCACCAGAAATTGGTTACATGAAGAGCTTGTCTATCAGTTTGGACTTGAGCTCAAACAGGATAAGCGGAGAAATTCCCGAGACGATGTCCAGTTTGACACAGTTACAGTCACTTGATCTTTCCAATAACAGGCTTTATGGAAATATTAAAGTGTTGGGTCTCTTGACTAGTCTCACGTCCCTTAATATCTCCTACAACAATTTCTCAGGTCCCATGCCTGTAACACCATTTTTTAGTACTCTATCAGAAGATTCATATTATCAAAACCTGAATCTCTGTGAATCAGTTGATGGGTTTACTTGTTCCTCAAAATCAATGCACAGAAATGGCTTGAAGTCTGCAAAAGCTGCTGCTTTTATCTCCATCATTCTTGCTGCAGTTGTCGCCATACTTTTTGCTTTGTGGATGCTAGTTTCACGAAATCGCAAGTACATGGAACAGAAACATTCTGGGACATTGACCTCTGCATCGGCCGCCGAGGATTTCTCTTATCCATGGACCTTCATCCCGTTCCAGAAGCTCAACTTTACCATAGATAACATCTTGGAATCAATGAAAGATGAAAATATAATTGGAAAAGGTTGCTCTGGGGTTGTTTATAAAGCAGATATGCCCAATGGTGAATTAGTTGCCGTGAAGAAACTGTGGAAAACAAAGCAAGATGAAGAAGCAGTCGACTCGTGTGCTGCAGAGATTCAAATTCTCGGGCATATTCGACATCGTAACATTGTGAAACTCATAGGTTATTGTTCCAATAGAAGTGTCAAGATACTTCTCTACAACTACATTTCAAATGGTAATCTGCAACAACTCTTGCAAGGAAACAGAAATCTGGACTGGGAGACAAGGTATAAAATTGCGGTTGGGACGGCTCAGGGATTGGCTTATCTTCATCATGATTGCGTGCCTGCAATTCTTCACAGAGATGTCAAATGCAATAACATACTTCTAGACTCGAAGTTTGAAGCTTATCTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACCCCAAGTTATCACCATGCGATTTCGAGAGTAGCCGGGTCCTACGGATATATTGCCCCAGAATACGGATATACCATGAACATCACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTTTACTAGAGATACTAAGTGGGCGTAGTGCAATTGAGACACAAGTTGGAGATGGCCTTCACATTGTTGAGTGGGTGAAGAAGAAGATGTCAAGTTTCGAACCCGCAATAACGATACTCGATACAAAGCTCCAGGGTTTACCAGATCAGATGGTGCAAGAAATGCTTCAAACACTTGGAATAGCAATGTTTTGTGTGAACTCTTCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTATTGATGGAGGTGAAGAGTCCTCCAGAAGAATGGGGGAAAACCTCCCAACCTCTAATAAAGCAGTCCTCAAATTTAAGTTCAAATAATACTCTCTTTTCCACAAGAAAATTGGGTGTAGAATTGGCCATGTCTTGCAGTGAAAAAGCAGAGAGACAGTGGAGAGCATGCTTTTACCGTACTGTGGAGGGCACATGCCTGATGACACAAATCTTGTTTCCTTTCCAGAAGCCATAA 3408 42.02 MEGVIHQFLERWLLYVIAMCLSLIIGSSLVASLSPDGEALLSLIAATGSSVASSSSVLASWNPSSQNPCAWEGITCSPQNRVISLSLPKTFLNLSFLPPELSSLSSLQLLNLSSTNVSGSIPPSFGLLTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLSNLTSLQSLCLQDNQFNGSIPSQFGSLLSLQEFRIGGNPYLSGEIPPQIGLLTNLTTFGAAATALSGAMPSTFGNLINLQTLSLYDTEMSGSIPPELGLCSELRDLYLHMNKLTGNIPPQLGRLQKLTSLFLWGNALSGAIPSEISNCSALVVFDASENDLSGEIPSDLGKLVVLEQFHISDNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPSQLGNLKSLQSFFLWGNSVSGTVPSSFGNCTELYALDLSRNKLTGIIPEEIFGLKKLSKLLLLGNSLSGGLPQSVANCQSLVRLRLGENQLSGQIPKEVGRLQNLVFLDLYMNHFSGRLPPEIANITVLELLDVHNNYITGEIPPQLGELVNLEQLDLSRNSFTGEIPQSFGNFSYLNKLILNNNLLTGSIPKSIKNLEKLTLLDLSCNSLSGTIPPEIGYMKSLSISLDLSSNRISGEIPETMSSLTQLQSLDLSNNRLYGNIKVLGLLTSLTSLNISYNNFSGPMPVTPFFSTLSEDSYYQNLNLCESVDGFTCSSKSMHRNGLKSAKAAAFISIILAAVVAILFALWMLVSRNRKYMEQKHSGTLTSASAAEDFSYPWTFIPFQKLNFTIDNILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQDEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNRSVKILLYNYISNGNLQQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPSYHHAISRVAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQVGDGLHIVEWVKKKMSSFEPAITILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEWGKTSQPLIKQSSNLSSNNTLFSTRKLGVELAMSCSEKAERQWRACFYRTVEGTCLMTQILFPFQKP 1135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18774045 18778881 - ClG42_08g0087200.10 Clacu08g0872 255214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0872 1135 PANTHER LEUCINE RICH REPEAT KINASE 2 367 1061 IPR051420 -
Clacu08g0872 1135 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Clacu08g0872 1135 ProSiteProfiles Protein kinase domain profile. 787 1077 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0872 1135 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Clacu08g0872 1135 Gene3D Ribonuclease Inhibitor 290 387 IPR032675 -
Clacu08g0872 1135 Gene3D Ribonuclease Inhibitor 388 453 IPR032675 -
Clacu08g0872 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 371 393 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 516 537 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 491 512 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 659 675 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 615 634 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 SMART serkin_6 787 1063 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0872 1135 Pfam Leucine rich repeat 539 598 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Leucine rich repeat 395 454 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Pfam Protein kinase domain 789 1056 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g0872 1135 ProSiteProfiles Leucine-rich repeat profile. 636 658 IPR001611 GO:0005515(InterPro)
Clacu08g0872 1135 Gene3D Ribonuclease Inhibitor 454 704 IPR032675 -
Clacu08g0872 1135 Gene3D Transferase(Phosphotransferase) domain 1 865 1079 - -
Clacu08g0872 1135 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 522 707 - -
Clacu08g0872 1135 FunFam Piriformospora indica-insensitive protein 2 435 521 - -
Clacu08g0872 1135 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Clacu08g0872 1135 SMART LRR_typ_2 489 512 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 176 200 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 537 560 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 585 609 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 297 321 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 152 175 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 634 659 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 393 416 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 128 151 IPR003591 -
Clacu08g0872 1135 SMART LRR_typ_2 417 441 IPR003591 -
Clacu08g0872 1135 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 865 1077 - -
Clacu08g0872 1135 PRINTS Leucine-rich repeat signature 420 433 - -
Clacu08g0872 1135 PRINTS Leucine-rich repeat signature 634 647 - -
Clacu08g0872 1135 SUPERFAMILY L domain-like 61 407 - -
Clacu08g0872 1135 Gene3D Phosphorylase Kinase; domain 1 752 864 - -
Clacu08g0872 1135 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 196 - -
Clacu08g0872 1135 ProSitePatterns Protein kinases ATP-binding region signature. 793 816 IPR017441 GO:0005524(InterPro)
Clacu08g0872 1135 SUPERFAMILY L domain-like 286 683 - -
Clacu08g0872 1135 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 864 - -
Clacu08g0872 1135 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 434 - -
Clacu08g0872 1135 SUPERFAMILY Protein kinase-like (PK-like) 771 1060 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1681 Clacu-Chr7:31561664 Clacu08g0872 Clacu-Chr8:18774045 5.70E-87 dispersed
Clacu08g0872 Clacu-Chr8:18774045 Clacu09g0984 Clacu-Chr9:9259670 3.60E-103 dispersed
Clacu08g0872 Clacu-Chr8:18774045 Clacu06g0787 Clacu-Chr6:9299984 7.30E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73750 PF00069 Pkinase 1.70E-46 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0872 - - - 0.0