Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0880 ATGGATTTGGCGCGCCGAGTCTCCACTCTCCAAAAGCAGCCAACCAGAATGAGAGATTCACCTGATGTTTTGGTGCCCGAGGTGAGAGACGCTAAAAATAATGCCATCAAGTTTTCTGCAGCACCTAAAGTTGGAGAACATGAGGATTTTGATTTTGTGCGTACCTTATATGAAGGTGCTATAGCTGGAGGTGCTGCTAGCCTCGTTGTAGAAGCTGCTCTATATCCAATTGATACAATAAAAACTCGTCTACAGGCTGTTCACGGAGGAGGAAAAGTTGTACTGAAGGGTCTTTATTCTGGATTGGCTGGAAATCTTGTTGGGATGTTTCCTGCCACTGCCGTTTTCGTTGGTGTGTATGAGCCTACCAAGCAGAAATTGCTCAAGTCTCTCCCTGAAAACGTCAATGCTTTAGCTCATCTGGCTGCAGGTGTCGCAGGAGGAGTGGCTTCATCAATCATCCGTGTACCAACAGAGGTAGTTAAGCAAAGGATGCAGACTAGCCACTTTGCGTCTGCATCGAATGCTGTCCACGTTATTGTTTCAAGGGAAGGCTTTAAAGGCCTTTATGCGGGTTATGGATCTTTCTTATTACGAGATTTGCCATTTGATGCCATTCAGTTCTGCATTTACGAACAACTTAGGATAGGGTACAAGCTAGCGGCACAAAGAGATCCAAATGACCCTGAGAATGCTATAATTGGTGCCTTTTCTGGTGCGGTTACTGGGGCTATAACCACTCCTTTTGATGTGATCAAAACTCGATTAATGGTCCAGGGATCAAATAGCCAATATCAAGGTATTCGTGATTGTTGTAGGACTATAATGAAGGAAGAAGGAGCACGTGCCTTCTTAAAGGGCATAGGGCCAAGGTGCCTGAGAAACCCGTCGAATCGCGATGATGCAGAATACGGGACCGGCCAGGTTTGGAACTGGAGCATTCAATGA 948 45.78 MDLARRVSTLQKQPTRMRDSPDVLVPEVRDAKNNAIKFSAAPKVGEHEDFDFVRTLYEGAIAGGAASLVVEAALYPIDTIKTRLQAVHGGGKVVLKGLYSGLAGNLVGMFPATAVFVGVYEPTKQKLLKSLPENVNALAHLAAGVAGGVASSIIRVPTEVVKQRMQTSHFASASNAVHVIVSREGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRIGYKLAAQRDPNDPENAIIGAFSGAVTGAITTPFDVIKTRLMVQGSNSQYQGIRDCCRTIMKEEGARAFLKGIGPRCLRNPSNRDDAEYGTGQVWNWSIQ 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18858415 18866690 - ClG42_08g0088000.10 Clacu08g0880 255222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0880 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 135 217 IPR018108 -
Clacu08g0880 315 SUPERFAMILY Mitochondrial carrier 57 294 IPR023395 -
Clacu08g0880 315 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 45 293 - GO:0000095(PANTHER)|GO:0005743(PANTHER)|GO:0009941(PANTHER)
Clacu08g0880 315 FunFam S-adenosylmethionine carrier 1 chloroplastic/mitochondrial 58 295 - -
Clacu08g0880 315 PRINTS Mitochondrial carrier protein signature 190 208 IPR002067 GO:0055085(InterPro)
Clacu08g0880 315 PRINTS Mitochondrial carrier protein signature 72 86 IPR002067 GO:0055085(InterPro)
Clacu08g0880 315 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085(InterPro)
Clacu08g0880 315 PRINTS Mitochondrial carrier protein signature 59 72 IPR002067 GO:0055085(InterPro)
Clacu08g0880 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 312 IPR018108 -
Clacu08g0880 315 Pfam Mitochondrial carrier protein 56 89 IPR018108 -
Clacu08g0880 315 Pfam Mitochondrial carrier protein 135 215 IPR018108 -
Clacu08g0880 315 Pfam Mitochondrial carrier protein 230 295 IPR018108 -
Clacu08g0880 315 Gene3D Mitochondrial carrier domain 58 298 IPR023395 -
Clacu08g0880 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 54 126 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0880 K15111 - - csv:101220750 480.715
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0880 Clacu-Chr8:18858415 Clacu09g0639 Clacu-Chr9:5483747 1.60E-16 dispersed
Clacu02g0103 Clacu-Chr2:1114344 Clacu08g0880 Clacu-Chr8:18858415 3.10E-102 transposed
Clacu02g1978 Clacu-Chr2:33293499 Clacu08g0880 Clacu-Chr8:18858415 2.40E-31 transposed
Clacu04g0732 Clacu-Chr4:21567128 Clacu08g0880 Clacu-Chr8:18858415 4.50E-32 transposed
Clacu06g1669 Clacu-Chr6:27459671 Clacu08g0880 Clacu-Chr8:18858415 1.90E-34 transposed
Clacu08g0812 Clacu-Chr8:18161369 Clacu08g0880 Clacu-Chr8:18858415 1.10E-29 transposed
Clacu05g2278 Clacu-Chr5:31139710 Clacu08g0880 Clacu-Chr8:18858415 1.70E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g472 . Blo13g00914 . Bda15g00180 Bpe04g01680 Bpe15g01071 Bma03g00328 . . Cmo04g01428 Cma04g01354 Cma18g00881 Car04g01431 Car18g00807 . . Cpe09g00429 . . . . . . . Cla05g02127 Cam05g2281 Cec05g2304 Cco05g2345 Clacu05g2278 Cmu05g2141 Cre05g2263 . Cone5ag0327 Cone11ag1076 Cone18ag0500 . . Chy10g01341 Cme10g00055 Blo13g00731 Blo04g00309 Bda14g00339 Bda15g00379 Bpe04g01680 . . . . . . . . . . Cpe01g01223 . . . . . . . . Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 Lsi04g00053 Csa05g02827 . .
Vvi18g1331 . . . . . . . . Cmo04g02578 Cmo15g00582 . . . . Sed05g0790 . Cpe13g00699 Bhi04g01747 Tan11g1101 Cmetu03g1735 . Hepe02g2813 . Lcy10g1370 Cla08g00747 Cam08g1174 Cec08g0764 Cco08g0871 Clacu08g0880 . Cre08g0682 . . . Cone20ag0664 . . . Cme03g01052 . . . . . . . . . . . . . Car04g02371 Car15g00536 Cpe01g02132 . . . . . . . . . . . . . . . Lsi08g00573 . Chy03g00489 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002717 3 2 1 1 1 1 3 1 1 2 1 1 3 2 2 2 2 2 3 1 2 2 2 2 2 2 2 3 2 2 56