Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0897 ATGGCGAAGAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTTGCTTTTTCTGTATGTAACTGTGTTGACGGTGATCGGGTACAAATCGGAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCCAATGGGCTTGCCGATGACTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCCGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA 864 51.39 MAKNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATLLFLYVTVLTVIGYKSETDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADDYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19070111 19073472 - ClG42_08g0089700.10 Clacu08g0897 255239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0897 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Clacu08g0897 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Clacu08g0897 287 NCBIfam MIP family channel protein 41 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Clacu08g0897 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Clacu08g0897 287 CDD MIP 37 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu08g0897 287 FunFam Probable aquaporin PIP1-2 22 285 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0897 Clacu-Chr8:19070111 Clacu10g2158 Clacu-Chr10:34732346 1.60E-100 dispersed
Clacu10g2005 Clacu-Chr10:33544530 Clacu08g0897 Clacu-Chr8:19070111 1.50E-117 wgd
Clacu04g0941 Clacu-Chr4:23657585 Clacu08g0897 Clacu-Chr8:19070111 4.50E-111 wgd
Clacu05g2291 Clacu-Chr5:31293989 Clacu08g0897 Clacu-Chr8:19070111 2.10E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0897 K09872 - csv:101205700 516.153