Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g0897 | ATGGCGAAGAATGCGGCGGAGCGCGGGTCGTTCTCGGGGAAGGACTACCACGATCCGCCACCGGTGCCGCTCATCGACGGCGAGGAGATAAGGAAGTGGTCGTTCTACAGAGCTTTGATTGCGGAGTTCATAGCGACTTTGCTTTTTCTGTATGTAACTGTGTTGACGGTGATCGGGTACAAATCGGAAACGGATGGAATCGGGAAGAAGAATGTGGATTCTTGTGGAGGAGTTGGGATTCTGGGAATTGCTTGGGCATTTGGAGGAATGATCTTCGTTCTTGTTTACTGTACTGCTGGAATTTCAGGGGGCCACATAAACCCAGCGGTGACATTTGGGCTGCTGTTGGGCCGAAAGGTGTCACTTGTGCGGGCCGTGATGTACATGGTGGCCCAATGTTTGGGGGCCATCAGCGGAGTTGGGCTTGTTAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGAGCCAATGGGCTTGCCGATGACTATACCATCGGCGTCGGACTGGCCGCCGAGATCGTCGGCACTTTCGTGTTGGTGTATACCGTCTTCTCCGCCACCGATCCTAAACGAAATGCCAGAGATTCCCATGTTCCCGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCATTTGGCTACCATTCCAATCACTGGCACTGGAATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATCTTCAATGAACAAAAGGCTTGGAATAACCATTGGATATTTTGGGTTGGACCCTTCATAGGAGCAGCCATTGCAGCATTCTACCACCAATTCATCTTGAGAGCAGGTGCTGTTAAAGCTCTTGGTTCATTTAGAAGCAACCCACATGTGTGA | 864 | 51.39 | MAKNAAERGSFSGKDYHDPPPVPLIDGEEIRKWSFYRALIAEFIATLLFLYVTVLTVIGYKSETDGIGKKNVDSCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLGRKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADDYTIGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGSAVIFNEQKAWNNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 19070111 | 19073472 | - | ClG42_08g0089700.10 | Clacu08g0897 | 255239 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g0897 | 287 | Gene3D | Glycerol uptake facilitator protein. | 22 | 287 | IPR023271 | - | |
Clacu08g0897 | 287 | Pfam | Major intrinsic protein | 29 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | SUPERFAMILY | Aquaporin-like | 29 | 271 | IPR023271 | - | |
Clacu08g0897 | 287 | NCBIfam | MIP family channel protein | 41 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 8 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Clacu08g0897 | 287 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | PRINTS | Major intrinsic protein family signature | 37 | 56 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Clacu08g0897 | 287 | CDD | MIP | 37 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Clacu08g0897 | 287 | FunFam | Probable aquaporin PIP1-2 | 22 | 285 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g0897 | Clacu-Chr8:19070111 | Clacu10g2158 | Clacu-Chr10:34732346 | 1.60E-100 | dispersed | |
Clacu10g2005 | Clacu-Chr10:33544530 | Clacu08g0897 | Clacu-Chr8:19070111 | 1.50E-117 | wgd | |
Clacu04g0941 | Clacu-Chr4:23657585 | Clacu08g0897 | Clacu-Chr8:19070111 | 4.50E-111 | wgd | |
Clacu05g2291 | Clacu-Chr5:31293989 | Clacu08g0897 | Clacu-Chr8:19070111 | 2.10E-131 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g0897 | K09872 | - | csv:101205700 | 516.153 |