Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0903 ATGAATAGAGGAATGGATTCAGTGATTGATCCAATGATGAACCATGACGAGCATTTAGATTCTCAGCTATGGCATGCCTGTGCCGGTGGGCTGATTCAATTGCCTGCCATAAACTCAAAGGTAGTCTACTTCCCCCAGGGCCACGCTGAGCATGCTCAGGGGTATGTCGATTTCGGGAATGCTCGAATTCCTTCACTCATTCCTTGCAGGGTATCTGGCATAAGACATATGGCAGATCCTGAAACTGATGAGGTTTTTGCTAAGATAAAGTTGACTCCGACGAGGACCAAAGAATTCAGTTTGGATAATGATGATAAGCTTCTAGGCCATAATGAAATTAGGAGTCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCCGTGCCTCGTTATTGCGCTGAGACCATCTTTCCTCGGTTGGACTACTCAGTAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGGCATCTTTTGACGACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTAGCTGGGGACTCAATTATTTTCTTGAGGGCAGAAAATGGAGATCTTTGTATTGGAGTTAGACGAGCGAAGAGGGGAATTGGTTGTGGAGTTGATTACTCACCTAGCTGGAACTCAACTAATTCAGGCCCTCCACCTGTGGGGTTTTCTGATTTTATGAGGGAGAATGAAGGTAGATTGGTGGGAAGAGACTCAAATGGGAATCTGAGTGGGAGACTGAAGGTAGAATCCGTTATTGAAGCTGCAGTGCTTGCTGCTAGTGGCAAGCCCTTCGAGGTTGTGTACTACCCATGTGCTGGTGCTCCAGAGTTTGTTGTTAAGGCCTCTTGTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGGCTTTTGAAACCGAGGATGCTTCTCGGATAAGCTGGTTTATGGGAACTATATCTGCTATCCAGGTAGCTGATCCTATGCGGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCGGAGTTACTGCGAAATGTGCAGAGTGTCAACCCATGGTTGGTTGAAGTGGTGGTAAATATGCCAGCTATCAATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCACGTCTTCCAATTCCAGCAGAAACTTCTGTATTTGATCACCTTCCAATGCCATCTTTTTCCACCAATATCTTTGATACAACCAACCCCTTACTAAGTATTACAGCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAAACTCCAAATCAGCAAACCGCTTCCGGGACAATTTCCCCCTGGTTTTAAGCACCTTGATGACGCCACTCTTCTTCCTGGCATCAGAGGCGATGATATTTTTGGAGACATGAAAAACCCTGATAATTGTTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCGAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAACTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTCTAACAGCTGCTCAGGAGATACGACGAATGCATCAGATGCAAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCACAACAAAATGGTTCACTGGAGAATTCATCAGAGGGAGGATCTACCTCGTACAATGGTCAAGACAAAACTGGTCTTGGCTTGGACACCGGTCATTGCAAAGTGTTTACAGAGTTGGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGGTCGTACGAAGAATTGTATAGAAAATTGGGCAATATGCTCAGTTTAAGAAGCTCAGAGATGCTGAACTCTGTTCTTTATCAGGATGCTCTTGGCTCTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACATTAG 2076 44.56 MNRGMDSVIDPMMNHDEHLDSQLWHACAGGLIQLPAINSKVVYFPQGHAEHAQGYVDFGNARIPSLIPCRVSGIRHMADPETDEVFAKIKLTPTRTKEFSLDNDDKLLGHNEIRSQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIIFLRAENGDLCIGVRRAKRGIGCGVDYSPSWNSTNSGPPPVGFSDFMRENEGRLVGRDSNGNLSGRLKVESVIEAAVLAASGKPFEVVYYPCAGAPEFVVKASCLRSAMQIHWYSAMRFKMAFETEDASRISWFMGTISAIQVADPMRWPDSPWRMLQVTWDEPELLRNVQSVNPWLVEVVVNMPAINVSPFSPPRKKPRLPIPAETSVFDHLPMPSFSTNIFDTTNPLLSITANKIPAGIQGARHTQFGLSSPKLQISKPLPGQFPPGFKHLDDATLLPGIRGDDIFGDMKNPDNCSHWLTMGNHIQSSKESSKESKETKPTHIILFGQLIFPNQQNSNSCSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSEGGSTSYNGQDKTGLGLDTGHCKVFTELENVGRTLDLSALRSYEELYRKLGNMLSLRSSEMLNSVLYQDALGSTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRH 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19108621 19111126 - ClG42_08g0090300.10 Clacu08g0903 255245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0903 691 Gene3D - 120 224 IPR015300 -
Clacu08g0903 691 MobiDBLite consensus disorder prediction 544 596 - -
Clacu08g0903 691 Gene3D - 602 686 - -
Clacu08g0903 691 SUPERFAMILY DNA-binding pseudobarrel domain 110 225 IPR015300 -
Clacu08g0903 691 Gene3D - 320 391 - -
Clacu08g0903 691 FunFam Auxin response factor 120 224 - -
Clacu08g0903 691 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Clacu08g0903 691 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu08g0903 691 FunFam Auxin response factor 319 392 - -
Clacu08g0903 691 ProSiteProfiles PB1 domain profile. 603 683 IPR053793 -
Clacu08g0903 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 683 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu08g0903 691 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
Clacu08g0903 691 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Clacu08g0903 691 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g2176 Clacu-Chr2:34909881 Clacu08g0903 Clacu-Chr8:19108621 2.50E-206 dispersed
Clacu07g0810 Clacu-Chr7:20536024 Clacu08g0903 Clacu-Chr8:19108621 2.30E-09 dispersed
Clacu08g0903 Clacu-Chr8:19108621 Clacu08g1243 Clacu-Chr8:22402708 3.00E-92 dispersed
Clacu04g0954 Clacu-Chr4:23760534 Clacu08g0903 Clacu-Chr8:19108621 3.80E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48153 PF02362 B3 4.00E-20 CL0405 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0903 K14486 - csv:101204568 1187.17