Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0908 ATGGAATTCCATCCGGAAAATGGCAACCATGGATCCGTGAAGGAGACCTCTTTGTGTGGCGACGTGGCGGTGTATTGGAGCAGTGCAGCGAAGGGGCTCGAGCAGAGTCATGTGGAGGAGTTTAAGCGTATGGTCATGGAATTTCGTCGCCCTATTGTGCGACTTGGAGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCTATTGCTACCCGTGCCTTTGATGTTGCAGTGGAGCTCTCTGAGGAGGCTCGCCCTGCCGTGGAGGCAAGTAGTAGGTGGGTTGTTAAAAGTATGACTAATGGAACCGATAGTTATGGTGTTACAACTGGTTTTGGTTCTACGTCGCATCGGAGGACTGACCAAGGAGAAGCCCTTCAAAAAGAGCTCATTAGATTCTTAAATGCTGGAATTTTTGGAAACGATCCGAATTCTTGCCATACATTGCCACAACAAGCAACCAGAGCTGCCATGGTGGTGAGAATCAACACACTTTTGCAAGGCTATTCTGGCATTAGGTTTGAAATTTTGGAAGCCATAACCAAATTACTCAACCACAACATAACTCCATGTCTCCCTCTTAGAGGTACCATTACAGCTTCTGGTGACCTAGTTCCTCTCTCATATATTGCTGGGCTTTTGACTGGTCGACCTAATTCTAAGGCCATTGGGCCTAACGGTGACTCTCTTAACCCAATTGAGGCATTTCATCTTGCTGGGATTAGTGGTGGTTTCTTCAACTTGCAACCTAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCAGTTGGGTCAGGCTTGGCTTCCATGGTTCTATTTGAAGCTAACTTTCTTGCTATCCTTTCTGCGATCTTGTCAGCAATTTTTGCTGAAGTTATGCAAGGAAAACCTGAGTTTACAGATCATTTGACTCATAAGTTAAAACACCATCCTGGTCAGATTGAAGCAGCTGCAATTATGGAGCATATATTAGATGGAAGTTCTTATGTCAAAAGTGCTAAAAAATTGCACGAAACTGACTCACTTCAAAAGCCTAAACAAGATCGATATGCTCTTAGAACTTCACCTCAGTGGCTCGGTCCTCAAATTGAAGTCATTAGATACTCCACCAAAATGATTGAACGTGAGATTAACTCAGTGAACGATAACCCATTGATTGATGTGTCGAGAAACAAGGCTTTGCATGGAGGAAATTTCCAAGGCACTCCCATTGGTGTGTCCATGGATAATACTCGTTTAGCCATTGCTTCTATTGGTAAACTCATGTTTGCACAATTCTCAGAACTTGTTAATGACTTCTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCAAGTTTGGATTACGGGTTTAAAGGTGCTGAGATTGCAATGGCTTCATATTGCTCTGAGCTTCAATACTTGGCAAATCCAGTAACCAGCCATGTCCAAAGCGCCGAACAACATAACCAAGACGTAAACTCATTGGGGTTGATATCATCAAGAAAGACAGCGGAAGCTGTTGAGATTTTAAAGCTTATGTCCACTACTTATTTGGTCGCATTATGCCAAGCTATTGATTTAAGACACATAGAGGAGATTTTGAAGAAAACAGTAAAGAATACCGTTAGCCAAGTGGCAAAAAAGATTCTGGTGTTGCACTTTAATGGCAATCTCCATCCAATTAGGCATAGTGAAAAGGATTTGCTTCAAGTCGTAGACAGAGAACACGTTTTTGCCTATATTGATGATCCTTGCAGTGCTTCATATCCATTGATGCAAAGGCTAAGACACGTGTTGGTGGATCATGCCCTAAAAAATGGTGAAAAAGAAAACAACCCAAGTGCTTCAATCTTCCTAAAGATCACAGCTTTTGAAGATGAATTAAAAGCACTTTTGCCTAAAGAAGTGGAAAATGCAAGAATGGAAGTGGAAAAAGGGAGCCCTACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTGTACAAGTTCATTAGAGAAACGTTGGGAACTCAATTGTTGACTGGCGAGAAAGATGTTTCGCCAGGAGAAGAATTCGATAAGGTTTTTTCAGCTATTTCTGATGGAAAATTGATAGATCCAATGCTTGAATGTTTGAAGGATTGGAATGGTGTTCCGCTTCCTCTTAGTTAG 2142 42.2 MEFHPENGNHGSVKETSLCGDVAVYWSSAAKGLEQSHVEEFKRMVMEFRRPIVRLGGESLTIAQVAAIATRAFDVAVELSEEARPAVEASSRWVVKSMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRFLNAGIFGNDPNSCHTLPQQATRAAMVVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGDSLNPIEAFHLAGISGGFFNLQPKEGLALVNGTAVGSGLASMVLFEANFLAILSAILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAKKLHETDSLQKPKQDRYALRTSPQWLGPQIEVIRYSTKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSTTYLVALCQAIDLRHIEEILKKTVKNTVSQVAKKILVLHFNGNLHPIRHSEKDLLQVVDREHVFAYIDDPCSASYPLMQRLRHVLVDHALKNGEKENNPSASIFLKITAFEDELKALLPKEVENARMEVEKGSPTIENQIKECRSYPLYKFIRETLGTQLLTGEKDVSPGEEFDKVFSAISDGKLIDPMLECLKDWNGVPLPLS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19205397 19209648 + ClG42_08g0090800.10 Clacu08g0908 255250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0908 713 FunFam Phenylalanine ammonia-lyase 13 259 - -
Clacu08g0908 713 CDD PAL-HAL 58 523 IPR001106 -
Clacu08g0908 713 NCBIfam phenylalanine ammonia-lyase 25 703 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Clacu08g0908 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841(InterPro)
Clacu08g0908 713 FunFam Phenylalanine ammonia-lyase 260 542 - -
Clacu08g0908 713 SUPERFAMILY L-aspartase-like 24 712 IPR008948 GO:0003824(InterPro)
Clacu08g0908 713 PANTHER HISTIDINE AMMONIA-LYASE 20 712 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Clacu08g0908 713 Gene3D Fumarase/aspartase (Central domain) 260 707 - -
Clacu08g0908 713 FunFam Phenylalanine ammonia-lyase 526 647 - -
Clacu08g0908 713 Pfam Aromatic amino acid lyase 60 536 IPR001106 -
Clacu08g0908 713 Gene3D - 526 647 IPR023144 -
Clacu08g0908 713 Gene3D - 15 259 IPR024083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1187 Clacu-Chr7:26706119 Clacu08g0908 Clacu-Chr8:19205397 0.00E+00 dispersed
Clacu07g1188 Clacu-Chr7:26709956 Clacu08g0908 Clacu-Chr8:19205397 0.00E+00 dispersed
Clacu04g0958 Clacu-Chr4:23808415 Clacu08g0908 Clacu-Chr8:19205397 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0908 K10775 - csv:101206890 1276.54