Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0933 ATGTCTGCTACTACTGGCATTCTCTTCTTCATCTGGTTGTTGAGCTCCACTCTGCCTTCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCCGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATTTCCAGAAGACAAATGCTGTCCTTTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGACTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACGATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGGAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCCGGAGACCAAAGCTCCTCCAGCTCGGGATCCAGTGGCAGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCGCCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGTTCTGTACACAAACTCGAACTACGATGCTTTATTATCATCAACATTGTCATTGTAG 1497 51.44 MSATTGILFFIWLLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRSVNDSISRRQMLSFHSKGQSNSCQTGNPIDDCWRCDSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPGNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDQSSSSSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLVLYTNSNYDALLSSTLSL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19464572 19470314 - ClG42_08g0093300.10 Clacu08g0933 255275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0933 498 Pfam Pectate lyase 157 338 IPR002022 -
Clacu08g0933 498 Gene3D - 74 416 IPR012334 -
Clacu08g0933 498 MobiDBLite consensus disorder prediction 416 443 - -
Clacu08g0933 498 PANTHER PECTATE LYASE 18-RELATED 32 416 IPR045032 GO:0030570(InterPro)
Clacu08g0933 498 SMART amb_all 149 346 IPR002022 -
Clacu08g0933 498 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Clacu08g0933 498 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Clacu08g0933 498 FunFam Pectate lyase 74 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0900 Clacu-Chr4:23333551 Clacu08g0933 Clacu-Chr8:19464572 1.90E-40 dispersed
Clacu08g0933 Clacu-Chr8:19464572 Clacu09g1989 Clacu-Chr9:34755578 2.10E-143 dispersed
Clacu04g0991 Clacu-Chr4:24080645 Clacu08g0933 Clacu-Chr8:19464572 2.50E-178 wgd
Clacu05g2323 Clacu-Chr5:31579650 Clacu08g0933 Clacu-Chr8:19464572 2.00E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0933 K01728 - csv:101207535 915.605