Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g0999 ATGGCGTCAGAGCGGCCGCTACTGATTATATCTCCAAAAACACCCAAGACTGTTTCTCACGATCTACAGAAACAGGAGTTGAACCAACCTGGATTGTTCTTCGCCATGGATTCTCGAAGCCCTAATGAGAATTCACCAAGTACGGAAATGAGTTATCGCTCATTCTCGCGGCGAAGTCAATCATCGCTGCAATCGAAGTCCTCAATTCGTGAAGTGGGTTCTAGTGATTTTGGATCGAGGCCTGTTCGTCATGGTTCTCGAGGTGCTGATTCTGAAGCATTGAGCATATCCCAGAAGGAGATCAGTGATGAAGATGCGAGGTTAATTTACATCGATGATCCCGAAAAGACAAACGAGAAGTTTGAATTCGCTAGAAATTCGATTCGCACCGGCAAGTATTCGATTCTTACTTTTCTGCCCAGGAATCTATTTGAACAATTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTCAATCAACTTCCCCAGCTTGCTGTTTTTGGTCGGGGAGTTTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACTGCATTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGATTAGCTTCAGTTTTGGTAGATGGTCAGTTTCAACCCAAGAAATGGAAGAATATTAGAGTTGGTGAGATAATTAAGATTGGTGCAAATGACACCATTCCTTGTGATATGGTGCTTCTTTCTACCAGTGATTCCACAGGGGTTGCATATGTGCAAACTCTGAATTTGGATGGGGAATCAAATTTGAAAACCCGGTATGCAAAACAGGAGACGATGTCTAAAATGCCCGACAAGGAGAAGATTGTTGGGTTGATTAAATGTGAGAAACCCAATAGGAATATTTATGGATTTCATGCTAATATGGAGATTGATGGGAAACGTCTTTCTCTTGGACCTCCGAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACCAGTTGGGCTGTTGGTGTTGCTGTCTATGCTGGCCGTGAGACGAAAGCCATGCTTAACAGTTCTGGAGCTCCATCAAAAAGAAGTCGACTCGAGACTCGCATGAATGTGGAGATTGTTATGCTCTCTCTCTTTCTTGTTGCTTTGTGTACCGTTGTTTGTGTTTTGGCTGCTGTTTGGTTCATCAGAAACAGGGAAGATTTGGACATTTTACCTTATTTCAGAAATAAGGACTTCTCAGAGGACCCACCTGAAACCTATAATTACTATGGATGGGGATTGGAGGCATTTTTTGTGTTCCTCATGTCGGTTATTGTGTTCCAGATCATGATCCCCATTTCACTATACATTTCAATGGAGGTTGTTCGTATTGGCCAGGCTTATTTCATGATCCGAGACACCCAAATGTATGACGAAACATCAAATTCAAGATTTCAGTGTCGGGCTTTGAACATAAATGAGGATTTAGGACAAATAAAGTATGTGTTTTCGGACAAAACAGGTACCCTTACCGAGAATAAGATGGAATTTCGATGTGCAAGCATATGGGGGGTCGATTATGGAGGTGAAAGTACCAATCCCCTCGACGAGCAGATTGGATACTCTGTTCGAGTGAATGGAAAGGTTTTGAGACCGAAATTGGTTGTCAAAACTGATCCTGAGCTTCTACACTTATCGAGAAGTGGAAAACACACCAAGGATGGAAGATACATTCATGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCGTTCCTCTCATTACCGAAACTTCTGATCCTTCAGTGCGATTAATTGACTACCAAGGGGAGTCTCCAGATGAACAGGCATTGGTTTATGCTGCAGCAGCATATGGTTTTATGCTAATTGAACGAACTTCTGGCCATATAGTTATTGACATACATGGTGAAAAACAAAGGTATAATGTTTTGGGAATGCACGAGTTTGATAGTGACAGGAAGAGGATGTCGGTGATACTGGGGTGTCCTGATATGACCTTTAAAGTATTTGTAAAAGGTGCTGATAACTCCATGCTCAAGGTGATGGGTGAAAATCTGAACATGGATATCATTCAATCGACTAAAGCTCATCTTTATTCATATTCATCAAAGGGTCTCAGAACACTCGTTATTGGGATGAAAGAACTCAGTTCCTCCGACTTTGATAAATGGCACATGATGTTTGAGGAAGCAAGTACCGCTTTGATCGGTAGGGCTGCTAAGCTTCGCAAGGTTGCCAGCTGTATTGAAAACAATTTGTTCATATTAGGTGCCTCAGGCATTGAGGATAAGTTACAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAACCGCGGGAATTAAAGTATGGGTTTTGACTGGAGACAAGCAAGAAACTGCCATATCTATAGGTTACTCCTCAAAGCTCTTGACAAACAAGATGACCCAAATTATAATTAACAGCAACTCGGCAGAATCATGCAAAAGGAAATTAGAAGATGCAATAATCATGACGAAGAAGCTTGCTACTGCCTCAGGCGTTGCACTGGATAATGAAAGAAGCACTGAAGTTGTAACAACTTCGGTTGCGTTGATCATTGATGGCAGCAGCCTCGTTCATATTCTTGACAGTGAACTGGAAGAACAGCTTTTCCAACTATCTTGTAACTGTTCGGTGGTGTTATGTTGTCGAGTCGCCCCATTGCAAAAGGCTGGCATTGTTGCTCTTGTGAAGCGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGTGCAAATGACGTGTCAATGATCCAAAAGGCAGATGTGGGTGTTGGCATCAGTGGTTTAGAGGGTCGACAAGCTGTTATGGCATCGGATTTTGCCATGGGACAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATCTTGTACAACTTTTACAGAAATGCGGTATTTGTTCTTGTTCTATTCTGGTATGTGCTCTTTACCGGTTACTCGTTGACAACGGCGATCAACCAATGGAGTAGTGTGCTTTACTCAATAATCTATACTTGTTTGCCCACTATTGTTGTTGGAATTCTTGACAAGGACTTGGGAAGAAGGACTCTTCTTAGTTACCCTCAACTCTATGGGGCTGGCCATAGACAGGAAAGCTACAATTCAAAATTGTTTTGGTTAACAATGATTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTCCTTGCATTTTGGGCTACCACTGTCGACATTTCAGGCCTCGGAGATCTGTGGCTACTCGCCACAGTCATTGTTGTCAACTTACATTTATCAATGGACGTGGTTCGATGGTATACTGTCACTCATGCTGTGATCTGGGGATCCACTGTCGCAACTGTCATTTGTGTCATTGTTCTTGATTCGATATTGTCGCTTCCTGGTTACTGGGCAATATATCATGTGGCGGGCACAGCATCTTTTTGGCTATGTTTGTTATCTATTGTCGTAGTAGCATTACTTCCTCGTTTCGTCGTAAAATACCTTTATCAGTCTTACTGTCCATGTGACATCCAAATAGCAAGAGAGGCTGATAAGTTTGGATGGACAAGAGAGCTGGGAGTTGTACAAACAGAGATGAGCCCAGTCCTCAACAATCCTTCACAAATCAATTCTTCATCACCTCTAAGAAAATCAATGGCGAACGGACTAATGAAGCTGACCCGCTTCGCCTCTCGCTCTTCTCTCCTTCCCCGTCAATGGCACCAGCCCTCTTCATTTTCTCGTCTCGGTGCTCAGGAATTTCTCCAGACAGCTGAGGTGATGAGCGGAAGTGAGATGAATGTCTCTAAAAGAGTTGCTGTAACTACCCTTGACGAGGCGAAGAGGGCCTTACCAGATACTTATGCTACTGTAAGAGAGTTGCTTACTCCACTGAAGTCTGGCATTGCCAAACGATCTGCTGTGTATGTATGCGATATTCCTAAGGCTGCACTTGGAGCTAATGGTAAGGCTGTTTTATCTAGATGGCAGGATGCAAGGGCATCTGTTGTCAAATTTTCAACATTAGGTGTCACCAGTAGATGTGATATGAGTGCCAGAGGGCCGTGCTTTGCGAGGTTTATGTCATCAAAATCTTCAGAGAAACATGGACAAACTGCATCTGAGAGCAAAAAAGAAATATCAACAGTGGAGGATCCATTTGATGCTCCTACATATAATATACCAGAGAAGCCTGTTACATTTGCAGAGGGAGCTTCCTACAGTTTTATCATCCTTGCAGGGCTTGGAGTTGCAGCTGCTGCTGGATACGCAGTTTTTAAGGAGCTTATATTTCAACCAAAAGAGTACAAGATCTTTGACAAGGCTCTTAAAAGGATTCAAGATGACAGCCAGGTTAGGGTAAGGATTGGTTCCCCTATAACCGGTTATGGGCAAGAAACTAGAAATCGAGCTGCTCGCCAACGTATCCCTAATAGGGTATGGACTGACGAAGATGGTGTAGAGCGAGTAGAGGTGAATTTTTATATCCGTGGGCCCCATGGAGCTGGGAAAGTTTATACTGAGATGTTCAAGGATCAAGTCGACAAGCAGTGGAAGTTCACATACTTGATTGTCGAGGTGAAATCGCCTTCTCCGGCCCAATTGATCCTAGAATCTTATATGCCTGCCTGA 4647 42.89 MASERPLLIISPKTPKTVSHDLQKQELNQPGLFFAMDSRSPNENSPSTEMSYRSFSRRSQSSLQSKSSIREVGSSDFGSRPVRHGSRGADSEALSISQKEISDEDARLIYIDDPEKTNEKFEFARNSIRTGKYSILTFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRGVSILPLAFVLLVTAFKDAYEDWRRHRSDKIENNRLASVLVDGQFQPKKWKNIRVGEIIKIGANDTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIVGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIVMLSLFLVALCTVVCVLAAVWFIRNREDLDILPYFRNKDFSEDPPETYNYYGWGLEAFFVFLMSVIVFQIMIPISLYISMEVVRIGQAYFMIRDTQMYDETSNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFRCASIWGVDYGGESTNPLDEQIGYSVRVNGKVLRPKLVVKTDPELLHLSRSGKHTKDGRYIHDFFLALAACNTIVPLITETSDPSVRLIDYQGESPDEQALVYAAAAYGFMLIERTSGHIVIDIHGEKQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADNSMLKVMGENLNMDIIQSTKAHLYSYSSKGLRTLVIGMKELSSSDFDKWHMMFEEASTALIGRAAKLRKVASCIENNLFILGASGIEDKLQKGVPEAIEALRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSAESCKRKLEDAIIMTKKLATASGVALDNERSTEVVTTSVALIIDGSSLVHILDSELEEQLFQLSCNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGYSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSYPQLYGAGHRQESYNSKLFWLTMIDTVWQSIAIFFIPLLAFWATTVDISGLGDLWLLATVIVVNLHLSMDVVRWYTVTHAVIWGSTVATVICVIVLDSILSLPGYWAIYHVAGTASFWLCLLSIVVVALLPRFVVKYLYQSYCPCDIQIAREADKFGWTRELGVVQTEMSPVLNNPSQINSSSPLRKSMANGLMKLTRFASRSSLLPRQWHQPSSFSRLGAQEFLQTAEVMSGSEMNVSKRVAVTTLDEAKRALPDTYATVRELLTPLKSGIAKRSAVYVCDIPKAALGANGKAVLSRWQDARASVVKFSTLGVTSRCDMSARGPCFARFMSSKSSEKHGQTASESKKEISTVEDPFDAPTYNIPEKPVTFAEGASYSFIILAGLGVAAAAGYAVFKELIFQPKEYKIFDKALKRIQDDSQVRVRIGSPITGYGQETRNRAARQRIPNRVWTDEDGVERVEVNFYIRGPHGAGKVYTEMFKDQVDKQWKFTYLIVEVKSPSPAQLILESYMPA 1548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20034903 20046839 - ClG42_08g0099900.10 Clacu08g0999 255341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g0999 1548 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 499 766 IPR023299 GO:0000166(InterPro)
Clacu08g0999 1548 FunFam Phospholipid-transporting ATPase 597 730 - -
Clacu08g0999 1548 NCBIfam HAD-IC family P-type ATPase 425 514 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g0999 1548 NCBIfam HAD-IC family P-type ATPase 882 995 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Clacu08g0999 1548 Pfam Cation transport ATPase (P-type) 601 677 - -
Clacu08g0999 1548 FunFam Phospholipid-transporting ATPase 181 350 - -
Clacu08g0999 1548 Pfam E1-E2 ATPase 209 449 - -
Clacu08g0999 1548 SUPERFAMILY HAD-like 480 953 IPR036412 -
Clacu08g0999 1548 SFLD p-type atpase 477 963 IPR044492 -
Clacu08g0999 1548 Pfam Phospholipid-translocating ATPase N-terminal 109 175 IPR032631 -
Clacu08g0999 1548 SUPERFAMILY Calcium ATPase, transduction domain A 206 347 IPR008250 -
Clacu08g0999 1548 MobiDBLite consensus disorder prediction 34 96 - -
Clacu08g0999 1548 Gene3D - 179 350 - -
Clacu08g0999 1548 SFLD C1.7: P-type atpase like 477 963 - -
Clacu08g0999 1548 Pfam TIM21 1408 1534 IPR013261 GO:0005744(InterPro)|GO:0030150(InterPro)
Clacu08g0999 1548 Gene3D - 596 729 IPR023299 GO:0000166(InterPro)
Clacu08g0999 1548 MobiDBLite consensus disorder prediction 38 74 - -
Clacu08g0999 1548 FunFam Mitochondrial import inner membrane translocase subunit tim21 1435 1548 - -
Clacu08g0999 1548 NCBIfam phospholipid-translocating P-type ATPase 123 1187 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Clacu08g0999 1548 ProSitePatterns E1-E2 ATPases phosphorylation site. 495 501 IPR018303 -
Clacu08g0999 1548 PRINTS P-type cation-transporting ATPase superfamily signature 493 507 - -
Clacu08g0999 1548 PRINTS P-type cation-transporting ATPase superfamily signature 912 931 - -
Clacu08g0999 1548 Pfam Phospholipid-translocating P-type ATPase C-terminal 940 1179 IPR032630 -
Clacu08g0999 1548 MobiDBLite consensus disorder prediction 1 22 - -
Clacu08g0999 1548 Gene3D Mitochondrial import inner membrane translocase subunit Tim21 1439 1546 IPR038552 -
Clacu08g0999 1548 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 97 1179 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Clacu08g0999 1548 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1178 IPR023298 -
Clacu08g0999 1548 Gene3D - 750 952 IPR023214 -
Clacu08g0999 1548 CDD P-type_ATPase_APLT_Dnf-like 125 1072 - -
Clacu08g0999 1548 FunFam Phospholipid-transporting ATPase 752 952 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0688 Clacu-Chr4:20833905 Clacu08g0999 Clacu-Chr8:20034903 0.00E+00 dispersed
Clacu07g0242 Clacu-Chr7:2823072 Clacu08g0999 Clacu-Chr8:20034903 1.60E-151 dispersed
Clacu08g0999 Clacu-Chr8:20034903 Clacu09g0081 Clacu-Chr9:755600 1.30E-175 dispersed
Clacu08g0999 Clacu-Chr8:20034903 Clacu05g2684 Clacu-Chr5:34421051 5.20E-185 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g0999 K14802 - csv:101212953 2258.41