Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1008 ATGCAGACCTGTTTTTGTTGTGTTTGTCATCTTCATCTGGCGTTCTTGTCTCTGAGGTTTAACATCTGTCTTGGATTGATTTCCCCCTCTCCATATTTCGATAGTCTTGCAGTTCCCTTGAGGGTTTTATCTACCATTCACCCTGTCCAATGTTTGGCATTGGCCATCAATTTCTGGAATTTCGTTGGATTGCTTCACACCATATCTGCTTGGGTTCTCAAAATCGAGTTGAATGAGGTGGATTCACTACCTGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGTCTCACACTGGATGAGGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCTTTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCTGAGGCCAACCAAACTGTTGGTAAAGACAATGAGGACAATAATGTCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACTGTCGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGGCAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCGAATAAAAAAGGTGCGGGTCCTGTTGTTGAAATTGACGCAAATATCACACCCCAGTTTCAACAAACGCAGTGGATGCCGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCTGTGATGGATGTTCCATATGTAGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGACATCTGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGACAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAATGAAAGGCTCAGGAAACGGAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCTCCTGAGCCGAAGTATCAGCTTCGAAGAACTTCGTCAGCGCCGTTCTAA 1191 45.68 MQTCFCCVCHLHLAFLSLRFNICLGLISPSPYFDSLAVPLRVLSTIHPVQCLALAINFWNFVGLLHTISAWVLKIELNEVDSLPAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMPYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20117921 20123025 + ClG42_08g0100800.10 Clacu08g1008 255350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1008 396 CDD bZIP_plant_BZIP46 326 380 - -
Clacu08g1008 396 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 329 344 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1008 396 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 101 394 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Clacu08g1008 396 Coils Coil 342 376 - -
Clacu08g1008 396 SUPERFAMILY Leucine zipper domain 326 371 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1008 396 MobiDBLite consensus disorder prediction 331 396 - -
Clacu08g1008 396 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 324 376 - -
Clacu08g1008 396 Gene3D - 324 377 - -
Clacu08g1008 396 Pfam bZIP transcription factor 326 373 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1008 396 MobiDBLite consensus disorder prediction 331 376 - -
Clacu08g1008 396 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 324 369 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1008 396 SMART brlzneu 322 394 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1472 Clacu-Chr3:28266943 Clacu08g1008 Clacu-Chr8:20117921 1.10E-51 dispersed
Clacu08g1008 Clacu-Chr8:20117921 Clacu10g1879 Clacu-Chr10:32417419 6.40E-31 dispersed
Clacu08g1008 Clacu-Chr8:20117921 Clacu08g1760 Clacu-Chr8:27025905 2.00E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48162 PF00170 bZIP_1 4.60E-13 CL0018 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1008 K14432 - csv:101213915 563.148