Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1013 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGCTGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGATGACTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAAAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAACTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTCTTTTGATCAGTGACACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGACCCCACCCTTCAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTAGATGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCAGCAGCATTCGATTCTCCATTCGGCATGTATCCCAACGATAACATCTCCGACTTCAGATTTGGTTCTCCATTTAATATGGCATCAATTGATTATGCAGCAGTAGACACAGCATTGCCCAAACAAGATACTTCCTTATGGTACCTTTGA 1824 45.61 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEETLARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPSFQTNDDKSSSPAPPSFNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNMASIDYAAVDTALPKQDTSLWYL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20162505 20164328 + ClG42_08g0101300.10 Clacu08g1013 255355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1013 607 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu08g1013 607 Coils Coil 36 70 - -
Clacu08g1013 607 MobiDBLite consensus disorder prediction 69 94 - -
Clacu08g1013 607 MobiDBLite consensus disorder prediction 24 46 - -
Clacu08g1013 607 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu08g1013 607 Coils Coil 373 393 - -
Clacu08g1013 607 FunFam Ethylene insensitive 3-like 1 83 161 - -
Clacu08g1013 607 MobiDBLite consensus disorder prediction 428 447 - -
Clacu08g1013 607 MobiDBLite consensus disorder prediction 448 462 - -
Clacu08g1013 607 FunFam Ethylene insensitive 3-like 1 171 308 - -
Clacu08g1013 607 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 605 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Clacu08g1013 607 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Clacu08g1013 607 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Clacu08g1013 607 MobiDBLite consensus disorder prediction 428 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1384 Clacu-Chr3:26767648 Clacu08g1013 Clacu-Chr8:20162505 2.00E-105 dispersed
Clacu03g1455 Clacu-Chr3:28091388 Clacu08g1013 Clacu-Chr8:20162505 1.80E-197 dispersed
Clacu07g0961 Clacu-Chr7:23914508 Clacu08g1013 Clacu-Chr8:20162505 3.90E-80 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48163 PF04873 EIN3 3.50E-132 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1013 K14514 - csv:101214396 1112.44