Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1038 ATGAGTTGTGCTCTCTCAAATGTGATTCCATGGCCGTCAAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCTCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGGCGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGTTTTATTTATTTATTTAAAATTAGCTGCACATATACATGGCAAAGCTCATAATTTTGTTCTTGTTTGTGTTGTGATATGTGATGATGATCAACCCATTGACATTGAAATAAATGGAGCAGTTTATTTAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAACTTTTCGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTCATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAAGTTATCACTCTCCACCTCTCTCCATTACTCCACTCTACCGAGTCACAAATTTAGGACTTGTTTGAAATGA 1230 41.63 MSCALSNVIPWPSRASRDGGELLLLPPQLVVEMLNHTSQWQIIPLPQKEAPGFVELADIDGRGDLKLIYGTKGLGIQHKGRRENKVLFIYLKLAAHIHGKAHNFVLVCVVICDDDQPIDIEINGAVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTKLSLSTSLHYSTLPSHKFRTCLK 409
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 20403835 20417350 - ClG42_08g0103800.10 Clacu08g1038 255380
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1038 409 ProSiteProfiles AP2/ERF domain profile. 194 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 SUPERFAMILY DNA-binding domain 126 159 IPR016177 GO:0003677(InterPro)
Clacu08g1038 409 CDD AP2 193 254 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 ProSiteProfiles AP2/ERF domain profile. 77 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 MobiDBLite consensus disorder prediction 265 288 - -
Clacu08g1038 409 SUPERFAMILY DNA-binding domain 193 254 IPR016177 GO:0003677(InterPro)
Clacu08g1038 409 Gene3D AP2/ERF domain 193 254 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 Gene3D AP2/ERF domain 81 160 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 SMART rav1_2 194 258 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 SMART rav1_2 89 164 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1038 409 FunFam AP2-like ethylene-responsive transcription factor 193 254 - -
Clacu08g1038 409 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 125 284 - -
Clacu08g1038 409 MobiDBLite consensus disorder prediction 263 288 - -
Clacu08g1038 409 Pfam AP2 domain 193 244 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1038 Clacu-Chr8:20403835 Clacu10g1480 Clacu-Chr10:27915146 5.20E-68 dispersed
Clacu05g2399 Clacu-Chr5:32311312 Clacu08g1038 Clacu-Chr8:20403835 8.70E-58 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48166 PF00847 AP2 8.60E-12 CL0081 Clacu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1038 - - - 0.0