Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g1038 | ATGAGTTGTGCTCTCTCAAATGTGATTCCATGGCCGTCAAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCTCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCCAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGGCGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGTTTTATTTATTTATTTAAAATTAGCTGCACATATACATGGCAAAGCTCATAATTTTGTTCTTGTTTGTGTTGTGATATGTGATGATGATCAACCCATTGACATTGAAATAAATGGAGCAGTTTATTTAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAACTTTTCGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGTTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATACTAATAATAATGTCATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAAGTTATCACTCTCCACCTCTCTCCATTACTCCACTCTACCGAGTCACAAATTTAGGACTTGTTTGAAATGA | 1230 | 41.63 | MSCALSNVIPWPSRASRDGGELLLLPPQLVVEMLNHTSQWQIIPLPQKEAPGFVELADIDGRGDLKLIYGTKGLGIQHKGRRENKVLFIYLKLAAHIHGKAHNFVLVCVVICDDDQPIDIEINGAVYLGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDTNNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTKLSLSTSLHYSTLPSHKFRTCLK | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 20403835 | 20417350 | - | ClG42_08g0103800.10 | Clacu08g1038 | 255380 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g1038 | 409 | ProSiteProfiles | AP2/ERF domain profile. | 194 | 252 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | SUPERFAMILY | DNA-binding domain | 126 | 159 | IPR016177 | GO:0003677(InterPro) | |
Clacu08g1038 | 409 | CDD | AP2 | 193 | 254 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | ProSiteProfiles | AP2/ERF domain profile. | 77 | 158 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | MobiDBLite | consensus disorder prediction | 265 | 288 | - | - | |
Clacu08g1038 | 409 | SUPERFAMILY | DNA-binding domain | 193 | 254 | IPR016177 | GO:0003677(InterPro) | |
Clacu08g1038 | 409 | Gene3D | AP2/ERF domain | 193 | 254 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | Gene3D | AP2/ERF domain | 81 | 160 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | SMART | rav1_2 | 194 | 258 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | SMART | rav1_2 | 89 | 164 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu08g1038 | 409 | FunFam | AP2-like ethylene-responsive transcription factor | 193 | 254 | - | - | |
Clacu08g1038 | 409 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 125 | 284 | - | - | |
Clacu08g1038 | 409 | MobiDBLite | consensus disorder prediction | 263 | 288 | - | - | |
Clacu08g1038 | 409 | Pfam | AP2 domain | 193 | 244 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g1038 | Clacu-Chr8:20403835 | Clacu10g1480 | Clacu-Chr10:27915146 | 5.20E-68 | dispersed | |
Clacu05g2399 | Clacu-Chr5:32311312 | Clacu08g1038 | Clacu-Chr8:20403835 | 8.70E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48166 | PF00847 | AP2 | 8.60E-12 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g1038 | - | - | - | 0.0 |