Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1040 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAAACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCAAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACCGATTCATTTGCCTCACAAACTCGCGCCGGAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGTCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAAGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 825 46.55 MLRLQWLSSSLVPSFNSELSPETVSNCKLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQSAFEPGSQTDSFASQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20433900 20437571 + ClG42_08g0104000.10 Clacu08g1040 255382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1040 274 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 82 258 - -
Clacu08g1040 274 Gene3D Transcriptional Coactivator Pc4; Chain A 82 255 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu08g1040 274 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 274 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Clacu08g1040 274 MobiDBLite consensus disorder prediction 46 79 - -
Clacu08g1040 274 Pfam Whirly transcription factor 97 231 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Clacu08g1040 274 SUPERFAMILY ssDNA-binding transcriptional regulator domain 89 274 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1040 K26559 - - csv:101203474 478.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0179 Clacu-Chr8:3600249 Clacu08g1040 Clacu-Chr8:20433900 8.10E-31 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1040 . 71 274 Whirly Transcription Factor Family AT1G14410 74.8 7.4e-92 334.0
Clacu08g0179 . 56 172 Whirly Transcription Factor Family AT1G71260 70.1 4.0e-44 175.3
Clacu08g1040 . 57 274 Whirly Transcription Factor Family AT2G02740 72.1 1.9e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48167 PF08536 Whirly 9.20E-61 CL0609 Clacu TF