Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1053 ATGGTTGGCTTTAGAACCTTGTTTGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATGGCCCAAGATGCCTACAATCCTGACCCCGAACTTGTTACTGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGCAAATATAAAGGACCATGTTTGGCCACGAACCCCATTGACAGATGTTGGAGATGCGATCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCATCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATCTTTGGGTCTACTAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGACTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATCCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAACATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG 1308 47.86 MVGFRTLFVCSLLFFVVANADVDEDEYWRNRAAEAQKMAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKSKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLACAPRKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20524947 20526502 + ClG42_08g0105300.10 Clacu08g1053 255395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1053 435 SUPERFAMILY Pectin lyase-like 75 397 IPR011050 -
Clacu08g1053 435 Gene3D - 83 428 IPR012334 -
Clacu08g1053 435 PANTHER PECTATE LYASE 18-RELATED 18 430 IPR045032 GO:0030570(InterPro)
Clacu08g1053 435 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570(InterPro)
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Clacu08g1053 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Clacu08g1053 435 SMART amb_all 158 355 IPR002022 -
Clacu08g1053 435 Pfam Pectate lyase 168 349 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1053 Clacu-Chr8:20524947 Clacu10g1478 Clacu-Chr10:27896404 1.10E-185 dispersed
Clacu08g1053 Clacu-Chr8:20524947 Clacu05g2657 Clacu-Chr5:34212655 3.90E-191 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1053 K01728 - csv:101217922 821.231