Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1060 ATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCTGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTAAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTGGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCGTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTTATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAATGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGCTTACTCTGA 3717 41.97 MAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRIMYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASLL 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20608176 20614823 - ClG42_08g0106000.10 Clacu08g1060 255402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1060 1238 PANTHER OS08G0260000 PROTEIN 115 1108 - -
Clacu08g1060 1238 SUPERFAMILY PYP-like sensor domain (PAS domain) 877 983 IPR035965 -
Clacu08g1060 1238 FunFam Phytochrome 519 650 - -
Clacu08g1060 1238 SUPERFAMILY PYP-like sensor domain (PAS domain) 188 300 IPR035965 -
Clacu08g1060 1238 NCBIfam PAS domain S-box protein 737 853 IPR000014 -
Clacu08g1060 1238 Pfam PAS fold 183 299 IPR013654 GO:0006355(InterPro)
Clacu08g1060 1238 Gene3D - 519 692 IPR043150 -
Clacu08g1060 1238 CDD PAS 874 985 IPR000014 -
Clacu08g1060 1238 ProSiteProfiles Histidine kinase domain profile. 1014 1233 IPR005467 -
Clacu08g1060 1238 Gene3D PAS domain 188 435 - -
Clacu08g1060 1238 Gene3D PAS domain 877 991 - -
Clacu08g1060 1238 PRINTS Phytochrome signature 752 767 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 825 842 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 247 269 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 432 453 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 544 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 347 366 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 629 648 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 662 680 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 733 749 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 845 865 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 ProSiteProfiles PAS repeat profile. 730 800 IPR000014 -
Clacu08g1060 1238 Gene3D - 1070 1235 IPR036890 -
Clacu08g1060 1238 Coils Coil 511 531 - -
Clacu08g1060 1238 ProSitePatterns Phytochrome chromophore attachment site signature. 432 441 IPR013516 -
Clacu08g1060 1238 ProSiteProfiles PAS repeat profile. 863 915 IPR000014 -
Clacu08g1060 1238 SUPERFAMILY GAF domain-like 312 511 - -
Clacu08g1060 1238 MobiDBLite consensus disorder prediction 113 133 - -
Clacu08g1060 1238 Pfam Phytochrome region 527 701 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 332 504 IPR016132 -
Clacu08g1060 1238 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1119 1229 IPR003594 -
Clacu08g1060 1238 CDD HATPase_Phy-like 1118 1229 IPR044767 -
Clacu08g1060 1238 Gene3D - 313 675 IPR029016 -
Clacu08g1060 1238 SMART pas_2 862 931 IPR000014 -
Clacu08g1060 1238 SMART pas_2 732 798 IPR000014 -
Clacu08g1060 1238 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1065 1226 IPR036890 -
Clacu08g1060 1238 SUPERFAMILY GAF domain-like 522 699 - -
Clacu08g1060 1238 Pfam PAS fold 733 847 IPR013767 GO:0006355(InterPro)
Clacu08g1060 1238 Pfam PAS fold 863 985 IPR013767 GO:0006355(InterPro)
Clacu08g1060 1238 SMART HisKA_10 1007 1071 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu08g1060 1238 FunFam Phytochrome 726 857 - -
Clacu08g1060 1238 SMART gaf_1 332 524 IPR003018 GO:0005515(InterPro)
Clacu08g1060 1238 Pfam His Kinase A (phospho-acceptor) domain 1008 1068 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu08g1060 1238 SMART HKATPase_4 1119 1231 IPR003594 -
Clacu08g1060 1238 SUPERFAMILY PYP-like sensor domain (PAS domain) 736 843 IPR035965 -
Clacu08g1060 1238 Pfam GAF domain 335 513 IPR003018 GO:0005515(InterPro)
Clacu08g1060 1238 Gene3D PAS domain 725 862 - -
Clacu08g1060 1238 CDD PAS 741 847 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0294 Clacu-Chr2:2635498 Clacu08g1060 Clacu-Chr8:20608176 0.00E+00 dispersed
Clacu05g0764 Clacu-Chr5:6460879 Clacu08g1060 Clacu-Chr8:20608176 0.00E+00 dispersed
Clacu08g1060 Clacu-Chr8:20608176 Clacu08g1064 Clacu-Chr8:20648858 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1060 K12120 - csv:101208491 2153.64