Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1060 ATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGTTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCTGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCTACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATATAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTAAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGATGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTGGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCGTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAATGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTTATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTTGCGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTTATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAATGTATGCTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGACGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGCTTACTCTGA 3717 41.97 MAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLVSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDIRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWLREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRIMYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKASLL 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20608176 20614823 - ClG42_08g0106000.10 Clacu08g1060 255402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1060 1238 PANTHER OS08G0260000 PROTEIN 115 1108 - -
Clacu08g1060 1238 SUPERFAMILY PYP-like sensor domain (PAS domain) 877 983 IPR035965 -
Clacu08g1060 1238 FunFam Phytochrome 519 650 - -
Clacu08g1060 1238 SUPERFAMILY PYP-like sensor domain (PAS domain) 188 300 IPR035965 -
Clacu08g1060 1238 NCBIfam PAS domain S-box protein 737 853 IPR000014 -
Clacu08g1060 1238 Pfam PAS fold 183 299 IPR013654 GO:0006355(InterPro)
Clacu08g1060 1238 Gene3D - 519 692 IPR043150 -
Clacu08g1060 1238 CDD PAS 874 985 IPR000014 -
Clacu08g1060 1238 ProSiteProfiles Histidine kinase domain profile. 1014 1233 IPR005467 -
Clacu08g1060 1238 Gene3D PAS domain 188 435 - -
Clacu08g1060 1238 Gene3D PAS domain 877 991 - -
Clacu08g1060 1238 PRINTS Phytochrome signature 752 767 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 825 842 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 247 269 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 432 453 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 544 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 347 366 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 629 648 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 662 680 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 733 749 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 PRINTS Phytochrome signature 845 865 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 ProSiteProfiles PAS repeat profile. 730 800 IPR000014 -
Clacu08g1060 1238 Gene3D - 1070 1235 IPR036890 -
Clacu08g1060 1238 Coils Coil 511 531 - -
Clacu08g1060 1238 ProSitePatterns Phytochrome chromophore attachment site signature. 432 441 IPR013516 -
Clacu08g1060 1238 ProSiteProfiles PAS repeat profile. 863 915 IPR000014 -
Clacu08g1060 1238 SUPERFAMILY GAF domain-like 312 511 - -
Clacu08g1060 1238 MobiDBLite consensus disorder prediction 113 133 - -
Clacu08g1060 1238 Pfam Phytochrome region 527 701 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1060 1238 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 332 504 IPR016132 -
Clacu08g1060 1238 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1119 1229 IPR003594 -
Clacu08g1060 1238 CDD HATPase_Phy-like 1118 1229 IPR044767 -
Clacu08g1060 1238 Gene3D - 313 675 IPR029016 -
Clacu08g1060 1238 SMART pas_2 862 931 IPR000014 -
Clacu08g1060 1238 SMART pas_2 732 798 IPR000014 -
Clacu08g1060 1238 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1065 1226 IPR036890 -
Clacu08g1060 1238 SUPERFAMILY GAF domain-like 522 699 - -
Clacu08g1060 1238 Pfam PAS fold 733 847 IPR013767 GO:0006355(InterPro)
Clacu08g1060 1238 Pfam PAS fold 863 985 IPR013767 GO:0006355(InterPro)
Clacu08g1060 1238 SMART HisKA_10 1007 1071 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu08g1060 1238 FunFam Phytochrome 726 857 - -
Clacu08g1060 1238 SMART gaf_1 332 524 IPR003018 GO:0005515(InterPro)
Clacu08g1060 1238 Pfam His Kinase A (phospho-acceptor) domain 1008 1068 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu08g1060 1238 SMART HKATPase_4 1119 1231 IPR003594 -
Clacu08g1060 1238 SUPERFAMILY PYP-like sensor domain (PAS domain) 736 843 IPR035965 -
Clacu08g1060 1238 Pfam GAF domain 335 513 IPR003018 GO:0005515(InterPro)
Clacu08g1060 1238 Gene3D PAS domain 725 862 - -
Clacu08g1060 1238 CDD PAS 741 847 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1060 K12120 - - csv:101208491 2153.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0294 Clacu-Chr2:2635498 Clacu08g1060 Clacu-Chr8:20608176 0.00E+00 dispersed
Clacu05g0764 Clacu-Chr5:6460879 Clacu08g1060 Clacu-Chr8:20608176 0.00E+00 dispersed
Clacu08g1060 Clacu-Chr8:20608176 Clacu08g1064 Clacu-Chr8:20648858 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0060 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1439.5
Clacu11g0252 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Clacu01g0671 . 24 971 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1296.2
Clacu02g0278 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Clacu06g0219 . 97 1023 Histidine Kinase Gene Family AT2G01830 53.7 5.7e-268 921.0
Clacu02g0966 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.9 6.9e-266 914.1
Clacu05g1754 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.4e-292 1000.0
Clacu08g1060 . 115 1234 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Clacu08g1064 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1612.4
Clacu02g0294 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1205.3
Clacu05g0764 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Clacu05g0764 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Clacu03g0719 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Clacu08g1060 . 135 1168 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1090.1
Clacu02g0294 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1078.2
Clacu08g1064 . 23 1075 Histidine Kinase Gene Family AT2G18790 50.7 5.4e-309 1057.4
Clacu02g0294 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.6 0.0e+00 1362.4
Clacu05g0764 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Clacu08g1060 . 123 1228 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.1
Clacu05g0764 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Clacu03g0719 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Clacu08g1060 . 122 1229 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1137.9
Clacu02g0294 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1117.4
Clacu03g0719 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Clacu05g0764 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56