Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1061 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACCCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACCAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAAGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAATGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAAGCACTTGTACTTGATGAGATAATAAATTACATTCAATCACTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGGCTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGGTAG 897 47.38 MDPPTLINEGSFPSNPNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKKRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRGSSPEWLHMQIGGGFERTR 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20631801 20634508 + ClG42_08g0106100.10 Clacu08g1061 255403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1061 298 MobiDBLite consensus disorder prediction 130 150 - -
Clacu08g1061 298 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 252 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Clacu08g1061 298 MobiDBLite consensus disorder prediction 104 125 - -
Clacu08g1061 298 SMART finulus 183 233 IPR011598 GO:0046983(InterPro)
Clacu08g1061 298 Coils Coil 224 244 - -
Clacu08g1061 298 CDD bHLH_AtBPE_like 167 252 - -
Clacu08g1061 298 MobiDBLite consensus disorder prediction 86 165 - -
Clacu08g1061 298 Gene3D - 174 246 IPR036638 GO:0046983(InterPro)
Clacu08g1061 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983(InterPro)
Clacu08g1061 298 FunFam Basic helix-loop-helix transcription factor 174 246 - -
Clacu08g1061 298 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983(InterPro)
Clacu08g1061 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0522 Clacu-Chr2:4882399 Clacu08g1061 Clacu-Chr8:20631801 6.50E-35 dispersed
Clacu08g1061 Clacu-Chr8:20631801 Clacu09g0843 Clacu-Chr9:7767241 1.40E-33 dispersed
Clacu08g1061 Clacu-Chr8:20631801 Clacu06g1762 Clacu-Chr6:28176299 1.80E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48169 PF00010 HLH 2.50E-08 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1061 - - - 0.0