Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1064 ATGTCATCAACAGGTAGACCAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCACCGCCGCCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCACGATGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTATGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACTGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACCACAATTAGTGATCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATCTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGATTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3426 42.18 MSSTGRPSQSSRNTGRGSSSSSSQSRHISRILTQTSIDAKLQSHFEQSGPSFDYSTSIHLTTNPTAAPPPATAATTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPFYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSSCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGLEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAACS 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20648858 20655704 + ClG42_08g0106400.10 Clacu08g1064 255406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1064 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1137 IPR003594 -
Clacu08g1064 1141 ProSiteProfiles Histidine kinase domain profile. 920 1139 IPR005467 -
Clacu08g1064 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1135 IPR036890 -
Clacu08g1064 1141 PANTHER OS08G0260000 PROTEIN 10 1015 - -
Clacu08g1064 1141 ProSiteProfiles PAS repeat profile. 767 819 IPR000014 -
Clacu08g1064 1141 Gene3D PAS domain 629 765 - -
Clacu08g1064 1141 Gene3D - 421 594 IPR043150 -
Clacu08g1064 1141 Gene3D - 957 1133 IPR036890 -
Clacu08g1064 1141 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 749 769 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 729 746 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 640 747 IPR035965 -
Clacu08g1064 1141 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Clacu08g1064 1141 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Clacu08g1064 1141 Pfam PAS fold 637 751 IPR013767 GO:0006355(InterPro)
Clacu08g1064 1141 Pfam PAS fold 767 891 IPR013767 GO:0006355(InterPro)
Clacu08g1064 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Clacu08g1064 1141 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Clacu08g1064 1141 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Clacu08g1064 1141 Gene3D - 207 577 IPR029016 -
Clacu08g1064 1141 SMART HKATPase_4 1026 1139 IPR003594 -
Clacu08g1064 1141 FunFam Phytochrome 630 761 - -
Clacu08g1064 1141 SUPERFAMILY GAF domain-like 206 413 - -
Clacu08g1064 1141 PIRSF Phytochrome_conventional 8 1141 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Clacu08g1064 1141 SUPERFAMILY GAF domain-like 424 601 - -
Clacu08g1064 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 781 889 IPR035965 -
Clacu08g1064 1141 Coils Coil 413 433 - -
Clacu08g1064 1141 ProSiteProfiles PAS repeat profile. 634 704 IPR000014 -
Clacu08g1064 1141 SMART pas_2 766 836 IPR000014 -
Clacu08g1064 1141 SMART pas_2 636 702 IPR000014 -
Clacu08g1064 1141 NCBIfam PAS domain S-box protein 641 757 IPR000014 -
Clacu08g1064 1141 CDD PAS 778 891 IPR000014 -
Clacu08g1064 1141 Pfam Phytochrome region 429 603 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 Gene3D PAS domain 81 329 - -
Clacu08g1064 1141 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Clacu08g1064 1141 Pfam His Kinase A (phospho-acceptor) domain 916 977 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu08g1064 1141 CDD PAS 645 751 IPR000014 -
Clacu08g1064 1141 MobiDBLite consensus disorder prediction 1 28 - -
Clacu08g1064 1141 FunFam Phytochrome 421 550 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1064 K12120 - - csv:101219585 1991.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1060 Clacu-Chr8:20608176 Clacu08g1064 Clacu-Chr8:20648858 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0060 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1439.5
Clacu11g0252 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Clacu01g0671 . 24 971 Histidine Kinase Gene Family AT2G01830 71.5 0.0e+00 1296.2
Clacu02g0278 . 290 1242 Histidine Kinase Gene Family AT2G01830 53.7 2.3e-277 952.2
Clacu06g0219 . 97 1023 Histidine Kinase Gene Family AT2G01830 53.7 5.7e-268 921.0
Clacu02g0966 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.9 6.9e-266 914.1
Clacu05g1754 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.4e-292 1000.0
Clacu08g1060 . 115 1234 Histidine Kinase Gene Family AT1G09570 80.2 0.0e+00 1831.6
Clacu08g1064 . 18 1141 Histidine Kinase Gene Family AT1G09570 71.5 0.0e+00 1612.4
Clacu02g0294 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1205.3
Clacu05g0764 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Clacu05g0764 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Clacu03g0719 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Clacu08g1060 . 135 1168 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1090.1
Clacu02g0294 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.2 0.0e+00 1078.2
Clacu08g1064 . 23 1075 Histidine Kinase Gene Family AT2G18790 50.7 5.4e-309 1057.4
Clacu02g0294 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.6 0.0e+00 1362.4
Clacu05g0764 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Clacu08g1060 . 123 1228 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1117.1
Clacu05g0764 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Clacu03g0719 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Clacu08g1060 . 122 1229 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1137.9
Clacu02g0294 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.5 0.0e+00 1117.4
Clacu03g0719 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Clacu05g0764 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56