Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1064 ATGTCATCAACAGGTAGACCAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTCCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACTGCCGCACCACCCCCCGCCACCGCCGCCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTAGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCACGATGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTATGCCATTATCCACCGCGTCACCGGTAGCCTTATCATCGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACTGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCCATCACTCGTCTCCAGGCTCTCTCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAAGTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGTCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCGATCAAAATAACAACAATAATGATGCTTCTTTGAAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGCGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACCACAATTAGTGATCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGACGTTCAATTCGAGATAAAAACACACAACTCCGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGACAAGTTCACAAAACTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATCTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATTTTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGATTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGTCTGAGACTTTATATGGAGACAATTTGAGACTTCAACAAGTGATGGCTGATTTCTTGTTGACATCAGTTAATTATGCACCAACAGGAGCCCAACTTATGGTTTCAACAAATTTGACTAAACATCATTTACGAAACTCACTACATCTTGTGCATCTTGAATTCAGGATAAGATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCCTGCTCATAA 3426 42.18 MSSTGRPSQSSRNTGRGSSSSSSQSRHISRILTQTSIDAKLQSHFEQSGPSFDYSTSIHLTTNPTAAPPPATAATTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFHDVTLLNPILVHSKSSGKPFYAIIHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALSSGSLARLCDTMVQEVFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMSIVVNEEEDEENFDQNNNNNDASLKKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKVWRLGITPTDFHLQDIASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTISDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKDVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGNSSSSCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGLEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSISQVMMKSKGKGIQIANEIAEEMMSETLYGDNLRLQQVMADFLLTSVNYAPTGAQLMVSTNLTKHHLRNSLHLVHLEFRIRYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAACS 1141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20648858 20655704 + ClG42_08g0106400.10 Clacu08g1064 255406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1064 1141 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1137 IPR003594 -
Clacu08g1064 1141 ProSiteProfiles Histidine kinase domain profile. 920 1139 IPR005467 -
Clacu08g1064 1141 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 970 1135 IPR036890 -
Clacu08g1064 1141 PANTHER OS08G0260000 PROTEIN 10 1015 - -
Clacu08g1064 1141 ProSiteProfiles PAS repeat profile. 767 819 IPR000014 -
Clacu08g1064 1141 Gene3D PAS domain 629 765 - -
Clacu08g1064 1141 Gene3D - 421 594 IPR043150 -
Clacu08g1064 1141 Gene3D - 957 1133 IPR036890 -
Clacu08g1064 1141 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 749 769 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 PRINTS Phytochrome signature 729 746 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 640 747 IPR035965 -
Clacu08g1064 1141 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Clacu08g1064 1141 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Clacu08g1064 1141 Pfam PAS fold 637 751 IPR013767 GO:0006355(InterPro)
Clacu08g1064 1141 Pfam PAS fold 767 891 IPR013767 GO:0006355(InterPro)
Clacu08g1064 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Clacu08g1064 1141 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Clacu08g1064 1141 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Clacu08g1064 1141 Gene3D - 207 577 IPR029016 -
Clacu08g1064 1141 SMART HKATPase_4 1026 1139 IPR003594 -
Clacu08g1064 1141 FunFam Phytochrome 630 761 - -
Clacu08g1064 1141 SUPERFAMILY GAF domain-like 206 413 - -
Clacu08g1064 1141 PIRSF Phytochrome_conventional 8 1141 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Clacu08g1064 1141 SUPERFAMILY GAF domain-like 424 601 - -
Clacu08g1064 1141 SUPERFAMILY PYP-like sensor domain (PAS domain) 781 889 IPR035965 -
Clacu08g1064 1141 Coils Coil 413 433 - -
Clacu08g1064 1141 ProSiteProfiles PAS repeat profile. 634 704 IPR000014 -
Clacu08g1064 1141 SMART pas_2 766 836 IPR000014 -
Clacu08g1064 1141 SMART pas_2 636 702 IPR000014 -
Clacu08g1064 1141 NCBIfam PAS domain S-box protein 641 757 IPR000014 -
Clacu08g1064 1141 CDD PAS 778 891 IPR000014 -
Clacu08g1064 1141 Pfam Phytochrome region 429 603 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Clacu08g1064 1141 Gene3D PAS domain 81 329 - -
Clacu08g1064 1141 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Clacu08g1064 1141 Pfam His Kinase A (phospho-acceptor) domain 916 977 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Clacu08g1064 1141 CDD PAS 645 751 IPR000014 -
Clacu08g1064 1141 MobiDBLite consensus disorder prediction 1 28 - -
Clacu08g1064 1141 FunFam Phytochrome 421 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1060 Clacu-Chr8:20608176 Clacu08g1064 Clacu-Chr8:20648858 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1064 K12120 - csv:101219585 1991.08