Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1080 ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAACGTCGGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCCTACCAATCCTCCATGGCCGGGGTTTCTGGTAACGCCGGAATTGAAGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGCAGTGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAGGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGCACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTGAGTGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTCTCACCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACACTGAGCGAATCTTCCGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAAGCTTACTGTTTTAATTCTAACTAATCCAATGATGGTTGATCCTGATTTAATGGTTCCATTTAAGCTCTTGCTTGCGAATTGTCCACACCAGACCAGACGAGAAATTCTCCATAAAATTCTCTCTCAATTTCCTATTCATCTCTCCGCCAGCAGCTTCAGATTTTTTCATATTGCTGGACTTGGTGGAATCAACAAATCCGTATTTTCCTGTTTCGTTTCACTGCTTCGGTGTTTTGTAAAGGGGAAAGGAAAAAGGATTAGGAATTGGGAAATAGTCATGGCTGTTCTTCCATTGGGAATACGCAGCAGTAGGTGA 1392 47.63 MSGSETGVITSREPFNVGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGSEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASEGLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFIADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWKLTVLILTNPMMVDPDLMVPFKLLLANCPHQTRREILHKILSQFPIHLSASSFRFFHIAGLGGINKSVFSCFVSLLRCFVKGKGKRIRNWEIVMAVLPLGIRSSR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20814560 20823387 + ClG42_08g0108000.10 Clacu08g1080 255422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1080 463 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 335 IPR039605 GO:0003680(InterPro)
Clacu08g1080 463 Gene3D - 172 307 - -
Clacu08g1080 463 MobiDBLite consensus disorder prediction 72 159 - -
Clacu08g1080 463 MobiDBLite consensus disorder prediction 122 142 - -
Clacu08g1080 463 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
Clacu08g1080 463 MobiDBLite consensus disorder prediction 313 350 - -
Clacu08g1080 463 MobiDBLite consensus disorder prediction 320 350 - -
Clacu08g1080 463 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Clacu08g1080 463 CDD DUF296 171 285 IPR005175 -
Clacu08g1080 463 FunFam AT-hook motif nuclear-localized protein 1-like 172 302 - -
Clacu08g1080 463 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0278 Clacu-Chr1:2736044 Clacu08g1080 Clacu-Chr8:20814560 6.50E-52 dispersed
Clacu02g1737 Clacu-Chr2:30878767 Clacu08g1080 Clacu-Chr8:20814560 9.00E-40 dispersed
Clacu06g0375 Clacu-Chr6:4477924 Clacu08g1080 Clacu-Chr8:20814560 4.50E-62 dispersed
Clacu08g1080 Clacu-Chr8:20814560 Clacu11g2082 Clacu-Chr11:31643692 2.00E-92 dispersed
Clacu08g1080 Clacu-Chr8:20814560 Clacu10g0173 Clacu-Chr10:2016930 6.30E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1080 - - - 0.0