Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1088 ATGGGCGGCGGTGGCGGTAGCAGCGGTGTTGTGCCAAGTAGGGAGTTAGATCAAACTCCGACATGGGCCGTTGCCTCTGTTTGCGCAATCATCATTCTTATTTCCATTATATTGGAAAAGGTTCTTCACATGGTTGGAGAGCTATTCCAAAAAAGGAAAAAGAAAGCATTGTATGAAGCGCTTGAGAAAGTTAAAGGCGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTCGGACAAAATTATATTGCTAAAGTTTGCATACCCTCAAAATATGCAAATACTATGTTGCCTTGCCCTTATAGAGGGACTCTACCTAAAAGCTCCCACGGCCTCGAGCCTCAAGATCACGACGAAGAGACTACAGATCATCACCGTAGGCTTCTTTGGTACGAGCATCGACGTCGTCTTGGTGGCGGTGCTTCCGTAGCAAGTTGCAAAACAGGGTATACACAACTTATATCTTTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTCCTCCATGTTGTATTTAGCGGCATAACCATGACTCTTGGGAGATTGAAAATTCGTGGGTGGAAGGTTTGGGAAAAACAGACTGAACAAGAACATGACGCCATGAACGATCCTACAAGGTTCAGACTTACTCACGAGACTTCCTTTGTTAGAGATCACAGCAGTTTTTGGACCAAAACACCCCTCTCCTTTTACTTTGTATGCTTTTGGAGGCAATTCCTGAGGTCCGTTAGTAGGGCAGATTACTTGTCTCTTAGACATGGTTTTGTCACTGTTCATTTAGCCCCAGGTAGTAAATTTGACTTTCAAAAGTACATCAAAAGATCATTAGAAGATGACTTTAAGGTGGTCGTGGGAATCAGTCCTCTGCTATGGGCATCAATGGTGCTTTTTCTACTTCTCAATGTTAGTGGGTGGCAAGTTATGTTTTGGGTGTCCATATTTCCTCTAGTGGTGATCTTAGCCGTTGGAACGAAGCTGCAAGGAATTATAACACAAATGGCTCTTGAAATCAAGGAAAGGCATGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCTGATAGACACTTTTGGTTTAGTTGGCCGGTTTTGGTTCTTTATCTCATCCATTATGTCCTCTTCCAGAATGCATTTGAGATTACATATTTCTTTTGGATATGGTATGAATTTGGGTTGAGATCATGTTTTCACGACAATTTTGATCTTATTATCATCAGAGTTGCCCTTGGGGTTGGAGTCCAAATTTTGTGCAGCTACATTACACTTCCATTATATGCACTTGTTACTCAGATGGGATCAACGATGAAGAAATCCATATTTGATGAACAAACTTCAAAAGCATTAAAGCAATGGCATAGAAGTGCTTTGAAGAAAAAGAACGAAGGGGGAAAGCCCGATTCAACGCCGATGCGAACTTTAGGCGGCAGCGGCGGCGGAGGAGGAGGAAGCCCCCCCGAGTCACCGACGCACTCCCCGCGTGAATTCCAACATCAATTGGTCTCTCAACCGTTGCCAACCGACGTCGAAGCCTCCACCATTCCTTCAGCCAACATAATGACCACCGTTGATCTCCATCAACATCAGCAAAACTATACCAATCGTGACTTGTTGAGCTGA 1635 43.49 MGGGGGSSGVVPSRELDQTPTWAVASVCAIIILISIILEKVLHMVGELFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYANTMLPCPYRGTLPKSSHGLEPQDHDEETTDHHRRLLWYEHRRRLGGGASVASCKTGYTQLISLNGLHQIHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWEKQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFLRSVSRADYLSLRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVSGWQVMFWVSIFPLVVILAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQNAFEITYFFWIWYEFGLRSCFHDNFDLIIIRVALGVGVQILCSYITLPLYALVTQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPDSTPMRTLGGSGGGGGGSPPESPTHSPREFQHQLVSQPLPTDVEASTIPSANIMTTVDLHQHQQNYTNRDLLS 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20867670 20874869 - ClG42_08g0108800.10 Clacu08g1088 255430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1088 544 PANTHER MLO-LIKE PROTEIN 1 13 504 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Clacu08g1088 544 Pfam Mlo family 14 476 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Clacu08g1088 544 MobiDBLite consensus disorder prediction 495 513 - -
Clacu08g1088 544 MobiDBLite consensus disorder prediction 462 513 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1088 K08472 - - csv:101208890 958.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2168 Clacu-Chr1:33140467 Clacu08g1088 Clacu-Chr8:20867670 5.20E-175 dispersed
Clacu03g0233 Clacu-Chr3:2666744 Clacu08g1088 Clacu-Chr8:20867670 1.10E-132 dispersed
Clacu06g0055 Clacu-Chr6:736365 Clacu08g1088 Clacu-Chr8:20867670 6.90E-102 dispersed
Clacu08g1088 Clacu-Chr8:20867670 Clacu10g0013 Clacu-Chr10:539007 2.60E-155 dispersed
Clacu08g1088 Clacu-Chr8:20867670 Clacu09g1917 Clacu-Chr9:34077229 1.20E-88 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g64 . . . . . . . . Cmo05g00988 . . . . . . . . . . . . . . . Cla08g00934 Cam08g1381 Cec08g0962 Cco08g1081 Clacu08g1088 . Cre08g0871 Cone4ag2032 . . . . . . . . Blo18g00738 . Bda01g01568 Bpe02g01762 Bpe05g00178 Bma01g00695 . . . . . . Car05g00852 . Cpe11g00780 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu09g1917 . 39 589 MLO family AT5G53760 69.2 6.5e-218 753.8
Clacu11g1998 . 5 530 MLO family AT5G53760 67.6 4.7e-208 721.1
Clacu05g1109 . 9 468 MLO family AT5G53760 51.3 4.0e-127 452.2
Clacu03g0235 . 10 466 MLO family AT3G45290 53.8 1.2e-135 480.3
Clacu09g1917 . 39 589 MLO family AT1G26700 68.2 1.0e-212 736.5
Clacu11g1998 . 1 511 MLO family AT1G26700 66.6 3.1e-201 698.4
Clacu05g2283 . 77 572 MLO family AT2G39200 67.5 9.5e-193 670.2
Clacu03g0233 . 8 536 MLO family AT2G39200 63.8 1.2e-192 669.8
Clacu02g2159 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Clacu02g2159 . 1 416 MLO family AT1G61560 65.9 5.9e-160 560.8
Clacu03g0233 . 1 416 MLO family AT1G61560 66.3 2.7e-157 552.0
Clacu05g2283 . 79 481 MLO family AT1G61560 65.5 1.4e-153 539.7
Clacu01g2168 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Clacu01g2168 . 18 490 MLO family AT2G17430 63.4 3.0e-172 602.1
Clacu10g0013 . 29 490 MLO family AT2G17430 63.4 1.5e-160 563.1
Clacu08g1088 . 4 482 MLO family AT2G17430 58.3 2.9e-151 532.3
Clacu01g2168 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Clacu10g0013 . 5 574 MLO family AT2G17480 59.0 2.6e-177 619.0
Clacu08g1088 . 11 483 MLO family AT2G17480 59.4 1.7e-152 536.6
Clacu03g0233 . 8 463 MLO family AT2G17480 52.6 2.3e-125 446.4
Clacu02g2159 . 8 463 MLO family AT2G17480 50.3 2.5e-124 443.0
Clacu08g1088 . 1 381 MLO family AT1G42560 59.7 5.4e-128 454.5
Clacu01g2168 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Clacu10g0013 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Clacu06g0055 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Clacu01g2168 . 8 387 MLO family AT5G65970 66.8 8.0e-145 510.8
Clacu10g0013 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Clacu08g1088 . 7 381 MLO family AT5G65970 58.0 1.4e-120 430.3
Clacu02g2159 . 2 381 MLO family AT5G65970 51.8 5.6e-106 381.7
Clacu03g0233 . 2 381 MLO family AT5G65970 50.9 2.2e-102 369.8
Clacu08g1088 . 2 544 MLO family AT2G33670 59.7 6.6e-174 607.4
Clacu01g2168 . 20 470 MLO family AT2G33670 61.6 5.1e-158 554.7
Clacu10g0013 . 29 471 MLO family AT2G33670 58.7 9.6e-141 497.3
Clacu05g2283 . 137 598 MLO family AT1G11310 64.3 2.2e-169 592.4
Clacu03g0233 . 63 506 MLO family AT1G11310 64.9 4.4e-165 578.2
Clacu02g2159 . 63 520 MLO family AT1G11310 62.7 7.0e-163 570.9
Clacu06g0055 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
Clacu06g0055 . 1 508 MLO family AT4G02600 72.9 8.9e-214 740.0
Clacu05g1109 . 5 562 MLO family AT1G11000 67.0 6.3e-213 737.3
Clacu10g0063 . 1 494 MLO family AT1G11000 51.9 1.0e-130 464.2
Clacu06g0055 . 1 508 MLO family AT4G02600 72.9 8.9e-214 740.0
Clacu05g2283 . 137 598 MLO family AT1G11310 64.3 2.2e-169 592.4
Clacu03g0233 . 63 506 MLO family AT1G11310 64.9 4.4e-165 578.2
Clacu02g2159 . 63 520 MLO family AT1G11310 62.7 7.0e-163 570.9
Clacu03g0235 . 10 466 MLO family AT3G45290 53.8 1.2e-135 480.3
Clacu05g1109 . 5 562 MLO family AT1G11000 67.0 6.3e-213 737.3
Clacu10g0063 . 1 494 MLO family AT1G11000 51.9 1.0e-130 464.2
Clacu08g1088 . 2 544 MLO family AT2G33670 59.7 6.6e-174 607.4
Clacu01g2168 . 20 470 MLO family AT2G33670 61.6 5.1e-158 554.7
Clacu10g0013 . 29 471 MLO family AT2G33670 58.7 9.6e-141 497.3
Clacu02g2159 . 1 416 MLO family AT1G61560 65.9 5.9e-160 560.8
Clacu03g0233 . 1 416 MLO family AT1G61560 66.3 2.7e-157 552.0
Clacu05g2283 . 79 481 MLO family AT1G61560 65.5 1.4e-153 539.7
Clacu01g2168 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Clacu01g2168 . 18 490 MLO family AT2G17430 63.4 3.0e-172 602.1
Clacu10g0013 . 29 490 MLO family AT2G17430 63.4 1.5e-160 563.1
Clacu08g1088 . 4 482 MLO family AT2G17430 58.3 2.9e-151 532.3
Clacu01g2168 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Clacu10g0013 . 5 574 MLO family AT2G17480 59.0 2.6e-177 619.0
Clacu08g1088 . 11 483 MLO family AT2G17480 59.4 1.7e-152 536.6
Clacu03g0233 . 8 463 MLO family AT2G17480 52.6 2.3e-125 446.4
Clacu02g2159 . 8 463 MLO family AT2G17480 50.3 2.5e-124 443.0
Clacu08g1088 . 1 381 MLO family AT1G42560 59.7 5.4e-128 454.5
Clacu01g2168 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Clacu10g0013 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Clacu01g2168 . 8 387 MLO family AT5G65970 66.8 8.0e-145 510.8
Clacu10g0013 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Clacu08g1088 . 7 381 MLO family AT5G65970 58.0 1.4e-120 430.3
Clacu02g2159 . 2 381 MLO family AT5G65970 51.8 5.6e-106 381.7
Clacu03g0233 . 2 381 MLO family AT5G65970 50.9 2.2e-102 369.8
Clacu09g1917 . 39 589 MLO family AT5G53760 69.2 6.5e-218 753.8
Clacu11g1998 . 5 530 MLO family AT5G53760 67.6 4.7e-208 721.1
Clacu05g1109 . 9 468 MLO family AT5G53760 51.3 4.0e-127 452.2
Clacu05g2283 . 77 572 MLO family AT2G39200 67.5 9.5e-193 670.2
Clacu03g0233 . 8 536 MLO family AT2G39200 63.8 1.2e-192 669.8
Clacu02g2159 . 8 505 MLO family AT2G39200 67.1 1.2e-190 663.3
Clacu06g0055 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Clacu09g1917 . 39 589 MLO family AT1G26700 68.2 1.0e-212 736.5
Clacu11g1998 . 1 511 MLO family AT1G26700 66.6 3.1e-201 698.4
Clacu06g0055 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93