Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1090 ATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTCAACGAATGCAGGGAAAGTAGAAGGAGACCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACAGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGAATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCCGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGATAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGCTCTCCAGAAACTAAACATTCCATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAACGATGTAAAACTCTTTGTGGCTCAGACTGTGGGGTCGTCTTTAATTAATATCATGAGAAGTGGTGATAAGCAGTCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATATCATCTTTTGAGGCGAGTGCAAGAGTTTTGGTTCAGGAAGGGATACTTCCACCTCTCGTTAAGGATCTTTTCACTGTTGGTTCGAATGTACTTCCCATGAAACTAAAAGAAGTATCTGCAACAATTCTTGCCAATGTTGTGAGCTCAGGCTGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACTACACTTGTCTCTGAAGATACTGTCCATAACCTGCTACAACTCATTAGCAATACCGGTCCAGCCATCGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACAAGTTCTCCTTCAAGTATTTCAAGCATTGTTAATGCCATTAGAAGCTCTGGTGCAATTATCAGCTTGGTTCAGTTTATTGAAGCCCCACAGGTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCTCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCAGAAAATACTGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAATGGATTTAGGCCTCTCCAGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCTACCTTAGAATTGTTCAACTCCGCCAAGGGGAGACTAGGGGTGGCCGATTTTTAACACCATTCCTTGAAGGCCTTGTTCGAATTCTTGCGAGGATTACATTTATATTGCCTGCTGAGCCTGATGCTCTTTCATTTTGTCGCATGCATAATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATCTCCAGATGGTTTCAGCCATGGCATTGGGAAACTTATCTCTAGAGTCCAAAAATTTGACTCAGTTGCCTACGCTTCCGGAACCTGGATTTTGTGCCTCAATTTTTCCATGTCTCAGCGCACAACCAGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACGTGTTCTTTGAGGGAAAGTTTTTGTCTTTTGGAAGGCAAGGCAGTGGACAAATTGGTAGCCCTTTTAGATCACACGAGTGAGAAGGTCGTTGAGGCAGCACTTGCGGCACTATCTACTTTATTGGACGATGGGGTCGATGTTGAGAAGGGGGTGGACATTTTGCACAGTGTAGGAGGGGTTCAGCCTATATTTGATGTGTTGCTTGAAAACCGTACAGAGAATCTAATGAGAAAGGCCGTTTGGACAGTCGAGAGGCTGTTGCGCACGGACAACATCGCAATGGAATTCTCGAATAATCCAAAGGTAAGTACAGCGCTTGTTGATGCCTTCCAGCATGGTGACAACAAAACCAGGCAAATTGCTGAGCGTGCCTTAAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTCCCTAATCCTAGTAATATGGGATAA 2520 44.29 MCLVLPSPATRDHDWVVAIADRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGSPETKHSMAAHLGELVLNNDVKLFVAQTVGSSLINIMRSGDKQSKEAALKALNQISSFEASARVLVQEGILPPLVKDLFTVGSNVLPMKLKEVSATILANVVSSGCDFNSIPVEPNNQTTLVSEDTVHNLLQLISNTGPAIECKLLQVLVGLTSSPSSISSIVNAIRSSGAIISLVQFIEAPQVDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPEMDLGLSRQMLDEGAFELVYLRIVQLRQGETRGGRFLTPFLEGLVRILARITFILPAEPDALSFCRMHNLAALFIELLQSNGLDNLQMVSAMALGNLSLESKNLTQLPTLPEPGFCASIFPCLSAQPVLTGLCPLHRGTCSLRESFCLLEGKAVDKLVALLDHTSEKVVEAALAALSTLLDDGVDVEKGVDILHSVGGVQPIFDVLLENRTENLMRKAVWTVERLLRTDNIAMEFSNNPKVSTALVDAFQHGDNKTRQIAERALRHVDKLPNFSNIFPNPSNMG 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20885007 20894721 - ClG42_08g0109000.10 Clacu08g1090 255432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1090 839 Pfam U-box domain 54 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1090 839 Coils Coil 275 295 - -
Clacu08g1090 839 Gene3D - 338 510 IPR011989 -
Clacu08g1090 839 SMART Ubox_2 55 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1090 839 CDD RING-Ubox_PUB 53 110 IPR045210 -
Clacu08g1090 839 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 138 IPR013083 -
Clacu08g1090 839 Gene3D - 600 830 IPR011989 -
Clacu08g1090 839 ProSiteProfiles U-box domain profile. 51 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu08g1090 839 Gene3D - 146 337 IPR011989 -
Clacu08g1090 839 SUPERFAMILY RING/U-box 40 133 - -
Clacu08g1090 839 SUPERFAMILY ARM repeat 168 779 IPR016024 -
Clacu08g1090 839 SMART arm_5 369 414 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 SMART arm_5 203 243 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 SMART arm_5 161 201 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 SMART arm_5 470 510 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 SMART arm_5 329 368 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 SMART arm_5 695 736 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 SMART arm_5 288 328 IPR000225 GO:0005515(InterPro)
Clacu08g1090 839 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 35 832 IPR052608 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1090 Clacu-Chr8:20885007 Clacu11g1569 Clacu-Chr11:26829994 2.10E-15 dispersed
Clacu08g1090 Clacu-Chr8:20885007 Clacu05g2536 Clacu-Chr5:33431751 5.20E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1090 - - - 0.0