Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1096 ATGAAGGACGACGCTGAGTTTCATAAAACGGTTTCCTCCGCCTCCCGAAATGGAAACTCCCTAGTGGCATGTCTCGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGAAGGTAAGAGCAACAGGGAAAGTTGTCCGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCAATGGCTACAAGAGGTTTCAAGGAAGTAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTCGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTTATTACGGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTTGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTGTTGTAGCACTCGAAATGACACCCATGCCCAGGAATCAGATCCCTGAAGTTGCTGAACTTCTGTTTGGAGGTTGCTGTATAGAAGTTGCTGAAAAAGCTATGTGCATAGACATGTGTGAAGCGTGTTAG 1170 44.87 MKDDAEFHKTVSSASRNGNSLVACLDGSRVESDSRVRFESRHSVNSSEGKSNRESCPKGSAAARSFTFRELAMATRGFKEVNLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALEMTPMPRNQIPEVAELLFGGCCIEVAEKAMCIDMCEAC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 20949112 20953855 + ClG42_08g0109600.10 Clacu08g1096 255438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1096 389 FunFam probable serine/threonine-protein kinase RLCKVII 49 153 - -
Clacu08g1096 389 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524(InterPro)
Clacu08g1096 389 PANTHER OS07G0668900 PROTEIN 45 355 - -
Clacu08g1096 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1096 389 SMART serkin_6 78 356 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1096 389 Gene3D Transferase(Phosphotransferase) domain 1 154 362 - -
Clacu08g1096 389 Gene3D Phosphorylase Kinase; domain 1 49 153 - -
Clacu08g1096 389 SUPERFAMILY Protein kinase-like (PK-like) 57 355 IPR011009 -
Clacu08g1096 389 MobiDBLite consensus disorder prediction 36 58 - -
Clacu08g1096 389 Pfam Protein kinase domain 79 347 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1096 389 CDD STKc_IRAK 84 352 - -
Clacu08g1096 389 ProSiteProfiles Protein kinase domain profile. 78 354 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1096 389 FunFam Serine/threonine-protein kinase PBS1 154 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1096 Clacu-Chr8:20949112 Clacu11g2056 Clacu-Chr11:31513777 2.00E-149 dispersed
Clacu08g1096 Clacu-Chr8:20949112 Clacu08g1098 Clacu-Chr8:20970313 8.40E-76 proximal
Clacu11g2025 Clacu-Chr11:31231577 Clacu08g1096 Clacu-Chr8:20949112 2.50E-64 wgd
Clacu02g0349 Clacu-Chr2:3202035 Clacu08g1096 Clacu-Chr8:20949112 9.50E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73758 PF00069 Pkinase 4.20E-48 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1096 - - - 0.0