Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu08g1138 | TCAAATCCTTTACTGGAAGCATTTGGAAATGCAAGGACCGTTAGAAATGATAATTCAAGTCGTTTTGGAAAGTTTGTTGAAATTCAATTTGATACCAGTGGTAGAATATCGGGTGCTGCAATTAGAACTTATCTTCTGGAACGGTCTCGTGTTGTACAAATCACGAACCCGGAGAGGAACTATCATTGTTTTTATCAGCTATGTGCATCCGGAAGGGATGCTGAGAAGTACAACTTAGACCACCCGAGTCATTTCCGATACTTAAATCAAAGCAAGACCTATGAGTTAGATGGAGTGAGCAATGCTGAAGAGTATATTAGGACAAGGAGGGCAATGGACATAGTTGGTATCAGTCATGAGGATCAGGAAGCTATCTTTCGTACCTTGGCCGCGATTTTGCATCTGGGGAACGTTGAGTTTTCTCCTGGAAAAGAACACGATTCTTCAGTCTTGAAGGACGAAAAGTCTACCTTTCATTTAGGGGTGGCTTCTAATCTTCTCATGTGTGATTCCAACCTCTTGGTCTCAGCCCTTTGTACTCGTTCAATTCAAACTCGTGAAGGAATTATTGTCAAAGCGCTAGACTGCGAAGGTGCTGTTGCTAGTCGGGATGCACTGGCAAAGACTGTTTATGCTCGTCTGTTTGATTGGCTTGTTGATAAGATTAACCTGTCCGTCGGGCAAGATTTAAATTCTCAATTTCAAATTGGGTTACTGGACATTTACGGTTTTGAATGCTTTAAGGACAATAGTTTTGAGCAGTTTTGCATCAACTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTCTTTAAGATGGAACAGGAGGAGTATAGCAAAGAGGAAATAAATTGGAGCTACATTGAATTCATTGACAATCAGGATGTGTTGGATTTGATTGAGAAGAAACCTATTGGGATCATTGGTTTGCTGGATGAGGCTTGTATGTTCCCAAGATCAACTCATGAAACATTCTCAACCAAATTGTTTCAGAATTTTCGTACTCATCCCAGGCTGGAAAGAACAAAATTTTCAGAAACAGATTTCACCCTTTCTCATTATGCTGGAAAGGTCACTTATCATACAGATACCTTTTTAGACAAAAATCGCGATTATGTTGTAGTAGAGCATTGCAATCTATTGGCTTCTTCTAAATGCAATTTTGTTGCTGGCCTTTTCTCTTCCTTACCAGAGGAATCTTCAAGATCATCATATAAATTTTCTTCCGTAGCCTCAAGATTTAAGCAACAACTTCAAGCACTCATGGAGACATTGAATTCTACCGAGCCCCATTATGTACGCTGTGTGAAGCCAAACTCTCTTAATAGGCCCCAGAAGTTTGAGAACCTAAGCATTCTGCATCAATTACGTTGTGGGGGTGTTTTGGAGGCTGTTCGAATAAGTCTAGCAGGTTATCCCACCAGACGAACTTATGCAGAGTTCATTGACCGTTTTGGTTTGTTGGCACCTGATTTATTGGATGGAAGCTACGATGAAAGATTGATTACAGAAAAGATTCTACAAAAGTTGAAGCTAAAAAATTTTCAGTTGGGTAGGACCAAAGTGTTTCTTAGGGCTGGTCAAATTGGAATACTGGATGCTCGAAGAGCTGAAGTATTAGACAATGCTGCAAAGTGCATTCAACGCCGATTACGAACATATCATGCGCGCAGGGATTTTCTATTGATGCGTTCTACTGCAATTGCACTCCAAGCATATTGCAGAGGATGCCTTGCCCGAAATTTTTATGTAGCAAAACGAGAAAGCACTGCTGCCACTACGATACAGAAATATATTCGCAGGTGGTTCTTCAGGAATATTTATTTGGAGATCTATTCAGCTGCTCTAACCATACAGTCCAGTATTCGTGGTTTTGCAACTCGCAGTAGGTTTTTGCATGATAGAAGAAATAAAGCTGCGGTATTAATTCAGGCTCGATGGAGGACATTCAAAGTTCGTGCTGTTTTCCATCGCCACCAAGCTTCTATTATTGCAATACAATGTCGATGGAGGCAAAAGCTTGCAAAAAGGGAACTTCGTAGACTTAAACAGGAGGCTAATGAAGCTGGAGCATTGCGTTTAGCTAAAAACAAACTTGAGAAGCAGTTGGAAGATCTTACATGGCGGTTGCATTTGGAGAAAAGATTGCGGGCTTCCAATGAAGAGGCCAAGTCAAACGAAATATTAAAATTGCAAAAGATGCTGGAATCCTTGAGTCTGGAGCTAGATGCAGCGAAATTGGCTGCAATCAATGAGTGCAACAAAAATGCTGTGCTGCAAAACCAAATGGAATTGTTGGCCAAGGAGAAGTCTGCTTTTGAAAGAGAAATTGTAGCGGTAGTTGAATTAAAAAAAGAAAATGCTTTCCTCAAGAGTGCTTTGGAGGCCATGGAAAAACGGAACTCAGCTCTGGAAGTTAAGCTTGTTGAGGCACAAAAGGATGGTAACCACACTGTTGAAAAGTTGCAGGATGTTGAACAGAAATGCACTAAGCTTCAACAGAATGTGAAAAGTCTTGAAGAGAAACTCTCAGTTCTAGAGGACGAGAATCATGTATTGCGACAGAAAGCCTTAAGTGCAACTCCAAGGAGCAACCGACCCAATTTTGTAAGGGCATTATCGGAGAAATCCTCAGTTGCGCTTGTCCCTAATGCTGAGCGGAAAACTCTATTTGAGTCACCAACACCCACAAAACTGGTTGCACCTTTTTCACAAGGTCTTTCTGAATCACGGCGAACAAAATTAACTGTAGAGAGACACCAGGAAAACTATGAAGTCCTTTCTAGGTGTATTAAAGAAAATTTGGGGTTTAAAGGTAGCAAGCCACTGGCCGCTTGCATCATCTACAAATGCCTTCTTAACTGGCATGCCTTTGAATCGGAACGAACAGTTATTTTTGACTATATAATTGAAGGAATCAATGATGCCCTCAAGGCTGGGGACGAGAATATTACCTTGCCATATTGGTTGTCAAATGCGTCTGCACTACTATGCCTCTTGCAAAGAAATTTGAAGTCAAATGGTTTTTTGAGCGCAGCTTCTCAGCGTTCCACAGGTTCCACTGGCTTAGCTAGCAGGATTTCTCAGGGACTAAAATCACCCTTCAAATATATTGGGTTTGAAGATGGGATTTCTCATCTTGAAGCAAGATATCCGGCAATATTGTTTAAACAGCAATTAACTGCTTGTGTGGAGAAGATCTTTGGCTTGATCCGTGATAATTTGAAAAAAGAATTATCTCCATTGCTGAGCTCATGTATTCAGGCACCAAAAGCTGCACGAGTACATGCTGGGAAGTCCTCTAGATCGCCTGGTGTTCCCCAGCCATCTACAAGTAGTCCATGGGATAACATAATAAAGTTTTTAGATTCTTTGATGAGTCGATTACGTGCGAATCATGTACCGTCTTTCTTCATTCGTAAATTGATTACTCAGGTGTTCTCGTTCATCAATATTTCACTTTTTAATAGCCTTCTTCTGCGACGTGAATGTTGTACGTTTTCAAATGGGGAGTACGTGAAATCTGGTCTTGCAGAACTAGAGAAGTGGATTGGCAATGCAACAGAGGAGTATTCAGGGACCTCTTGGCACGAGCTAAACTATATAAGGCAAGCTGTCGGGTTTCTGGTAATACATCAGAAGCGAAAGAAATCACTAGAAGAGATAAGACAGGATCTTTGCCCCGCATTGACCGTGAGACAAATTTATCGCATTAGTACTATGTATTGGGATGATAAATACGGGACTCAGAGTGTGTCAAACGAGGTGGTTGCTCAAATGAGGGAAATTCTGAACAAGGACAATCAGAACTTAACCTCAAATTCATTTTTATTGGATGATGATCTGAGCATCCCATTCTCTACTGAAGACATTGATATGGCTCTTCCCCCCCTTGAACCGTCGGACATTGAACTTCCCACTTTCCTGTCGGAATACCCCTGTGCACAATTTCTGGTCGAGCAGCAAAAGTAG | 3978 | 41.13 | SNPLLEAFGNARTVRNDNSSRFGKFVEIQFDTSGRISGAAIRTYLLERSRVVQITNPERNYHCFYQLCASGRDAEKYNLDHPSHFRYLNQSKTYELDGVSNAEEYIRTRRAMDIVGISHEDQEAIFRTLAAILHLGNVEFSPGKEHDSSVLKDEKSTFHLGVASNLLMCDSNLLVSALCTRSIQTREGIIVKALDCEGAVASRDALAKTVYARLFDWLVDKINLSVGQDLNSQFQIGLLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQEEYSKEEINWSYIEFIDNQDVLDLIEKKPIGIIGLLDEACMFPRSTHETFSTKLFQNFRTHPRLERTKFSETDFTLSHYAGKVTYHTDTFLDKNRDYVVVEHCNLLASSKCNFVAGLFSSLPEESSRSSYKFSSVASRFKQQLQALMETLNSTEPHYVRCVKPNSLNRPQKFENLSILHQLRCGGVLEAVRISLAGYPTRRTYAEFIDRFGLLAPDLLDGSYDERLITEKILQKLKLKNFQLGRTKVFLRAGQIGILDARRAEVLDNAAKCIQRRLRTYHARRDFLLMRSTAIALQAYCRGCLARNFYVAKRESTAATTIQKYIRRWFFRNIYLEIYSAALTIQSSIRGFATRSRFLHDRRNKAAVLIQARWRTFKVRAVFHRHQASIIAIQCRWRQKLAKRELRRLKQEANEAGALRLAKNKLEKQLEDLTWRLHLEKRLRASNEEAKSNEILKLQKMLESLSLELDAAKLAAINECNKNAVLQNQMELLAKEKSAFEREIVAVVELKKENAFLKSALEAMEKRNSALEVKLVEAQKDGNHTVEKLQDVEQKCTKLQQNVKSLEEKLSVLEDENHVLRQKALSATPRSNRPNFVRALSEKSSVALVPNAERKTLFESPTPTKLVAPFSQGLSESRRTKLTVERHQENYEVLSRCIKENLGFKGSKPLAACIIYKCLLNWHAFESERTVIFDYIIEGINDALKAGDENITLPYWLSNASALLCLLQRNLKSNGFLSAASQRSTGSTGLASRISQGLKSPFKYIGFEDGISHLEARYPAILFKQQLTACVEKIFGLIRDNLKKELSPLLSSCIQAPKAARVHAGKSSRSPGVPQPSTSSPWDNIIKFLDSLMSRLRANHVPSFFIRKLITQVFSFINISLFNSLLLRRECCTFSNGEYVKSGLAELEKWIGNATEEYSGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPALTVRQIYRISTMYWDDKYGTQSVSNEVVAQMREILNKDNQNLTSNSFLLDDDLSIPFSTEDIDMALPPLEPSDIELPTFLSEYPCAQFLVEQQK | 1325 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 21389391 | 21429984 | - | ClG42_08g0113800.10 | Clacu08g1138 | 255480 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu08g1138 | 1325 | Gene3D | - | 253 | 385 | - | - | |
| Clacu08g1138 | 1325 | ProSiteProfiles | IQ motif profile. | 615 | 642 | - | - | |
| Clacu08g1138 | 1325 | Gene3D | - | 474 | 540 | - | - | |
| Clacu08g1138 | 1325 | Coils | Coil | 758 | 778 | - | - | |
| Clacu08g1138 | 1325 | PRINTS | Myosin heavy chain signature | 288 | 316 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu08g1138 | 1325 | PRINTS | Myosin heavy chain signature | 3 | 30 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu08g1138 | 1325 | PRINTS | Myosin heavy chain signature | 235 | 263 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu08g1138 | 1325 | ProSiteProfiles | IQ motif profile. | 638 | 667 | - | - | |
| Clacu08g1138 | 1325 | ProSiteProfiles | IQ motif profile. | 661 | 690 | - | - | |
| Clacu08g1138 | 1325 | ProSiteProfiles | IQ motif profile. | 565 | 594 | - | - | |
| Clacu08g1138 | 1325 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 118 | 252 | - | - | |
| Clacu08g1138 | 1325 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 631 | 693 | IPR027417 | - | |
| Clacu08g1138 | 1325 | ProSiteProfiles | Dilute domain profile. | 969 | 1268 | IPR002710 | - | |
| Clacu08g1138 | 1325 | SMART | iq_5 | 541 | 563 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | SMART | iq_5 | 637 | 659 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | SMART | iq_5 | 589 | 611 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | SMART | iq_5 | 564 | 586 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | SMART | iq_5 | 660 | 682 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | SMART | iq_5 | 612 | 634 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | Pfam | DIL domain | 1144 | 1247 | IPR002710 | - | |
| Clacu08g1138 | 1325 | PANTHER | MYOSIN | 1 | 638 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Clacu08g1138 | 1325 | Coils | Coil | 782 | 816 | - | - | |
| Clacu08g1138 | 1325 | SMART | MYSc_2a | 1 | 540 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu08g1138 | 1325 | CDD | MyosinXI_CBD | 920 | 1291 | IPR037975 | GO:0007015(InterPro) | |
| Clacu08g1138 | 1325 | Coils | Coil | 730 | 750 | - | - | |
| Clacu08g1138 | 1325 | SMART | DIL_2 | 1143 | 1250 | IPR002710 | - | |
| Clacu08g1138 | 1325 | Gene3D | Kinesin motor domain | 386 | 473 | IPR036961 | - | |
| Clacu08g1138 | 1325 | Coils | Coil | 824 | 858 | - | - | |
| Clacu08g1138 | 1325 | Pfam | IQ calmodulin-binding motif | 544 | 562 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | Pfam | IQ calmodulin-binding motif | 640 | 658 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | Pfam | IQ calmodulin-binding motif | 615 | 633 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | Pfam | IQ calmodulin-binding motif | 593 | 610 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | Pfam | IQ calmodulin-binding motif | 569 | 582 | IPR000048 | GO:0005515(InterPro) | |
| Clacu08g1138 | 1325 | Coils | Coil | 674 | 718 | - | - | |
| Clacu08g1138 | 1325 | Gene3D | - | 592 | 638 | - | - | |
| Clacu08g1138 | 1325 | Gene3D | - | 541 | 591 | - | - | |
| Clacu08g1138 | 1325 | Gene3D | - | 639 | 689 | - | - | |
| Clacu08g1138 | 1325 | ProSiteProfiles | Myosin motor domain profile. | 1 | 539 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Clacu08g1138 | 1325 | Gene3D | Kinesin motor domain | 1 | 107 | IPR036961 | - | |
| Clacu08g1138 | 1325 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 586 | IPR027417 | - | |
| Clacu08g1138 | 1325 | Pfam | Myosin head (motor domain) | 1 | 527 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu08g1138 | Clacu-Chr8:21389391 | Clacu09g0359 | Clacu-Chr9:3107248 | 0.00E+00 | dispersed | |
| Clacu08g1138 | Clacu-Chr8:21389391 | Clacu06g0134 | Clacu-Chr6:1483935 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu08g1138 | K10357 | - | csv:101210527 | 2528.05 |