Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1142 ATGGGTCCTGCAGTTCTAAGCTCCCACACCAATGGCTTCTCTCACTCAGTTGATCGAAATTTCGAAGAGAAAAGCAATTACATCAATGGCGGCAATTCTTCTCACGAATCGGTAATCAACAATGTTAATGGCGACGATTGCCATTGGTACGAAGAGATCATCGACGAAAACCTCAAATGGTCCTTTGCTTTGAATAGCGTTCTGCAGAAAGGAACCAGTGAGTTTCAGGATATCGCTCTTTTAGATACGAAGCGTTTCGGAAAAGCATTGATGATCGATGGGAAGATGCAGAGTGCTGAAGCTGACGAATTTGTTTATCATGAATGTTTAATTCATCCCGCTCTGTTATGTCATTCCAATCCGAAAACTGTATTTATAATGGGCGGTGGAGAAGGTTCAACGGCAAGAGAAGTCCTCAAACACAAATCAATAGAGAAGGTTGTCATGTGTGATATTGATCAGGACGTGGTGGATTTCTGCCGTAAACATTTGACTGTGAACCGAGAGGCCTTTTGTCACAAGAAACTTCATCTTGTAATAAACGATGCCAGGTCGGAATTGGAAAAGAGAAAGGAGAAATATGATATAATTATTGGAGATCTAGCAGACCCCGTTAAAGATGGGCCTTGCTACAAGCTCTACACCAAGTCATTTTACCACGACATCGTCAAACCTAAACTCCACCACAATGGCATCTTTGTAACTCAGGCAGGACCGGCCGGGATTTTCACCCACAAAGAGGTTTTTACCTCAATTTATAACACAATCAAACAGACCTTTAATTATGTGATTGCTTACACTGCTTACATACCATCTTTTGCAGATACATGGGGATGGGTTATGGCATCAGATCATCCTTTCTGTATAAAATCTGAGGAATTGGATAAGAGAATTGAAGATAGAATCGATGGAGAGTTGCTCTATTTAACTGGTCCCTCAATTGTGTCTTCCACCATTATCAATAAGATTGTCTCTTTAGCGTTGTTGAATGAAACTCACATCTACACCGAAGCGACTGCAAAATTCATACATGGTCAAGGGGTTGGATTCAAGCAACTGAATGGGGGGAGTTGTGGCCGTGGTCTTATTGGGCCGCGATACTGGCGGGCTTTTGAAAAGCCCGCCAATGATATTGCAGTGGATAAAATGGATGAGACGCAATCTCCTTCTCCGCAACACTGTTTCTCCCTGGCTGAGAGGGAAAAAGATCGTCCGAATGTTCCTTCGTCAATGGCGACATCAACCACTCCTGCGCTAATTAGCTCGGAGCAGTTCAAATCCTCCGCCTCCATTCTTCCGCCTCTGCCGCTGAGCTTCACCGCCGCCAATACTAAGAATCACTGGCGAGTAAGGTGCGCATTGTCCTCGAACAATTGGCGGCATAGTAGGCGACTGTTCTCCATTTCTCTTGTCCTCTCAAATTTTTTCCTGATTCCTGAATATGCCTCTGCTGGAAGCTTTATGGACAAATACGTGAAGAAGAAAAAGCTGGATCCGCTTGAAGTTTATGTTCCAGCCGTCATATTGACGAAGTTACAAATCAAAGACGTCGGGAAACTTTTGGAAAGTAGTAAACCAGAATACGCGACATGCCGATCTCTCTTGCGTTCTGGACTTGCATCATCCCTTCGCGTAAATATTCGAGCAGTTGCACAATATGCGTCGGAGGATGGAAATGGAAACATTGCATTCGACAACGTTGATCAATGTCTCAGAGCCCTGGAAGAACTTGATTCGTCGCTTTTACGTGCCACAAGAAATGATCAAGGAACCTCAATTGAGTCGATGAAGACCAATATTGACACTGCCGTCCTTGCTCTAGACAGGCTCCTTCAAACTGTCCCTCCTGATGTGTTGGCCAAAGGGAAGGCCATTGCTGATGCTTATAGTTCTCCAGAAGAGGAGGAAACCGAAATTGTAGACCCACAACTGAAGCAGTTGGAATCGATTTTATAA 1956 44.07 MGPAVLSSHTNGFSHSVDRNFEEKSNYINGGNSSHESVINNVNGDDCHWYEEIIDENLKWSFALNSVLQKGTSEFQDIALLDTKRFGKALMIDGKMQSAEADEFVYHECLIHPALLCHSNPKTVFIMGGGEGSTAREVLKHKSIEKVVMCDIDQDVVDFCRKHLTVNREAFCHKKLHLVINDARSELEKRKEKYDIIIGDLADPVKDGPCYKLYTKSFYHDIVKPKLHHNGIFVTQAGPAGIFTHKEVFTSIYNTIKQTFNYVIAYTAYIPSFADTWGWVMASDHPFCIKSEELDKRIEDRIDGELLYLTGPSIVSSTIINKIVSLALLNETHIYTEATAKFIHGQGVGFKQLNGGSCGRGLIGPRYWRAFEKPANDIAVDKMDETQSPSPQHCFSLAEREKDRPNVPSSMATSTTPALISSEQFKSSASILPPLPLSFTAANTKNHWRVRCALSSNNWRHSRRLFSISLVLSNFFLIPEYASAGSFMDKYVKKKKLDPLEVYVPAVILTKLQIKDVGKLLESSKPEYATCRSLLRSGLASSLRVNIRAVAQYASEDGNGNIAFDNVDQCLRALEELDSSLLRATRNDQGTSIESMKTNIDTAVLALDRLLQTVPPDVLAKGKAIADAYSSPEEEETEIVDPQLKQLESIL 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21481128 21491040 + ClG42_08g0114200.10 Clacu08g1142 255484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1142 651 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 32 346 - GO:0006596(PANTHER)|GO:0010487(PANTHER)
Clacu08g1142 651 Pfam Spermidine synthase tetramerisation domain 49 100 IPR035246 -
Clacu08g1142 651 Gene3D Spermidine synthase, tetramerisation domain 48 99 IPR037163 -
Clacu08g1142 651 CDD AdoMet_MTases 128 202 - -
Clacu08g1142 651 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 284 IPR030374 -
Clacu08g1142 651 FunFam Polyamine aminopropyltransferase 100 347 - -
Clacu08g1142 651 Gene3D Vaccinia Virus protein VP39 100 351 IPR029063 -
Clacu08g1142 651 Hamap Polyamine aminopropyltransferase [speE]. 48 320 IPR001045 GO:0003824(InterPro)
Clacu08g1142 651 Pfam Spermine/spermidine synthase domain 103 285 - -
Clacu08g1142 651 NCBIfam fused MFS/spermidine synthase 118 267 - -
Clacu08g1142 651 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 313 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1142 K18787 - - csv:101210030 680.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0599 Clacu-Chr5:4990755 Clacu08g1142 Clacu-Chr8:21481128 3.10E-127 dispersed
Clacu08g1142 Clacu-Chr8:21481128 Clacu11g0298 Clacu-Chr11:2716787 1.70E-118 dispersed
Clacu08g1142 Clacu-Chr8:21481128 Clacu01g0051 Clacu-Chr1:471484 9.20E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g146 . . . . Bpe02g01556 . . . Cmo05g00427 Cmo12g00250 . . . . . . . Bhi04g01088 . . . . . . . . . . . . . . . Cone17ag0940 Cone20ag0283 . . . . . Blo18g00262 Bda01g01344 Bda13g01302 . . Bma01g00913 . . . . . . . Car05g00351 Cpe11g00355 . . . . . . . . Cla08g00991 Cam08g1437 Cec08g1016 Cco08g1139 Clacu08g1142 . Cre08g0927 Lsi08g00836 . Chy03g01199 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002288 2 3 1 1 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 1 2 6 2 2 63