Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1146 ATGATAACGACGACCACGGAATGTAACGAGAACAAGGAGTCAGGCTACGGCCACGTCGACTGTAGCCCAATGAAAAAAAGAAAAAAAAAAACGGAAAAAGCAAATTGGTGGGGACCACCCGCCACCTCAGCTAGGACCCACAAAAATTCATCCTTCAGATTAAAATTTCTGGGACCTCATCTAATCCACGAAGTCCAATCAGCCTTTACCGCTTCCTTCACTTTTAGGGCTTCATTCCCCAAATTCTCCACTCTTTATCGGCCCAAAATCCTCCCTTCCGGACTTTTCCCCTTTTTATCCAATTCATTTAATTTCACCTCTCTCCTCCGATTCAAATCCGCGTTCGTTTCTCTTTCTCTCTCTTCTTCCTTCTCCCACTGTCGTCTCTCAGAGTCAGAGGCTATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCATCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCGGCCGAGGTTGTCTTCGGCCAGTTAGCGCAGTGGTGGCTATGGCTGTCCATGGTGGTGGTTTTTGGCAGTGGGCGGTGCTTGTCGGCGGCAGACATGGTGAAAGTGAAGGTGGAGAAATTTAGACAAAGATCATCAGATTCATCAGCCATGGCAAGCAGGGTTGAGGAAGAAGCACCAGCCCTAGCAACTGATGAAGATCAAATCTCAGAGAAGTCTTGGCAGAAGAGTGATAGAGAGTTTCTAATGGTAATGGTAACTTTCATCGCAACCGTTTCTTTCCAAGCCGGGACGAACCCTCCTGGTGGTGTTTGGCAAGACGATAACAACCCTAGGTATGAAGCAGGGAAATCAATAATGGCTTCAAAACAACCATCTCGGTTCCTGGGTTTCATCACCGGCGTAACAACGACGATGGTAGTTTCGGTGATGCAACTATTGGTGCTGATGAATGAGTTGCCATTCAAGAAATCATCAGTTTCCAGGAACTTCCTCCACTTTACTTTGGGCATCGCATTTACCTTCATGACTATCGCTTATTGTTCGTCGATAATAGCTTTGACGCCGCGGTCGCAGTTGCCGCAGATCATCGTTACGTTGCTCATCAATCTTGTGACTGGTGTTGTTGGACTCCTCATTTTGTTCTACATACAAAGTAGAGATGTGTTTGTTAAGTATATACTGGAATATCTAATCAACCATAGTGGAATGGAAGTAAATGGTAAAACTTCAAATGGGTTGACGGCTCTTGACATTCTAACTCAAACCCATAGAGCTTTAAAGGACATGGATATTGCAGAGACTCTCAGAGCTGCCAATGCCGTCCGAGCCAGAAACAAAAAAACCCGTCGCACAGACTCTTGTTATTAA 2043 44.84 MITTTTECNENKESGYGHVDCSPMKKRKKKTEKANWWGPPATSARTHKNSSFRLKFLGPHLIHEVQSAFTASFTFRASFPKFSTLYRPKILPSGLFPFLSNSFNFTSLLRFKSAFVSLSLSSSFSHCRLSESEAMDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHQVDKSAFKGKKSGAHLISAEVVFGQLAQWWLWLSMVVVFGSGRCLSAADMVKVKVEKFRQRSSDSSAMASRVEEEAPALATDEDQISEKSWQKSDREFLMVMVTFIATVSFQAGTNPPGGVWQDDNNPRYEAGKSIMASKQPSRFLGFITGVTTTMVVSVMQLLVLMNELPFKKSSVSRNFLHFTLGIAFTFMTIAYCSSIIALTPRSQLPQIIVTLLINLVTGVVGLLILFYIQSRDVFVKYILEYLINHSGMEVNGKTSNGLTALDILTQTHRALKDMDIAETLRAANAVRARNKKTRRTDSCY 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21538971 21553370 + ClG42_08g0114600.10 Clacu08g1146 255488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1146 680 MobiDBLite consensus disorder prediction 279 308 - -
Clacu08g1146 680 FunFam PHD finger alfin-like protein 326 377 - -
Clacu08g1146 680 PANTHER CPG BINDING PROTEIN 141 375 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu08g1146 680 SUPERFAMILY FYVE/PHD zinc finger 323 371 IPR011011 -
Clacu08g1146 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 376 IPR013083 -
Clacu08g1146 680 MobiDBLite consensus disorder prediction 279 327 - -
Clacu08g1146 680 Pfam Domain of unknown function 464 576 IPR026961 -
Clacu08g1146 680 Pfam PHD-finger 334 372 IPR019787 -
Clacu08g1146 680 MobiDBLite consensus disorder prediction 440 460 - -
Clacu08g1146 680 CDD PHD_AL_plant 333 373 IPR044104 -
Clacu08g1146 680 Pfam Alfin 145 272 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1146 K26274 - - csv:101208889 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1569 Clacu-Chr3:29272895 Clacu08g1146 Clacu-Chr8:21538971 3.30E-24 dispersed
Clacu08g1146 Clacu-Chr8:21538971 Clacu11g0303 Clacu-Chr11:2748373 5.90E-117 dispersed
Clacu08g1146 Clacu-Chr8:21538971 Clacu08g1147 Clacu-Chr8:21554892 1.20E-13 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g0742 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Clacu11g0303 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.7 2.6e-94 342.0
Clacu08g1146 . 143 388 Alfin-like Transcription Factor Family AT1G14510 69.5 1.4e-92 336.3
Clacu09g0089 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 2.4e-92 335.5
Clacu07g0425 . 8 238 Alfin-like Transcription Factor Family AT1G14510 58.9 1.3e-77 286.6
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT1G14510 58.5 2.5e-73 272.3
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT5G26210 76.0 8.1e-112 400.2
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT5G26210 73.0 1.9e-100 362.5
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 1.5e-97 352.8
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.6e-94 342.0
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.3 1.7e-80 296.2
Clacu10g2174 . 1 226 Alfin-like Transcription Factor Family AT5G26210 55.4 2.2e-72 269.2
Clacu11g0303 . 1 250 Alfin-like Transcription Factor Family AT3G42790 70.1 4.9e-101 364.4
Clacu09g0089 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 8.0e-96 347.1
Clacu08g1146 . 135 373 Alfin-like Transcription Factor Family AT3G42790 69.3 1.4e-92 336.3
Clacu10g0742 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Clacu07g0425 . 7 240 Alfin-like Transcription Factor Family AT3G42790 59.8 3.3e-81 298.5
Clacu10g2174 . 9 226 Alfin-like Transcription Factor Family AT3G42790 56.6 2.4e-71 265.8
Clacu07g0425 . 1 240 Alfin-like Transcription Factor Family AT5G05610 78.0 1.2e-112 402.9
Clacu10g2174 . 6 226 Alfin-like Transcription Factor Family AT5G05610 74.3 9.1e-97 350.1
Clacu11g0303 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Clacu09g0089 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Clacu08g1146 . 142 373 Alfin-like Transcription Factor Family AT5G05610 66.4 8.6e-87 317.0
Clacu10g0742 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.0e-84 308.5
Clacu07g0425 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.6 1.3e-95 346.3
Clacu10g2174 . 44 226 Alfin-like Transcription Factor Family AT3G11200 75.4 1.9e-78 289.3
Clacu09g0089 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 4.7e-74 274.6
Clacu11g0303 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.3 1.4e-73 273.1
Clacu08g1146 . 178 373 Alfin-like Transcription Factor Family AT3G11200 65.8 1.9e-70 262.7
Clacu10g0742 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Clacu10g0742 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Clacu11g0303 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Clacu08g1146 . 135 292 Alfin-like Transcription Factor Family AT2G02470 77.8 4.4e-65 245.0
Clacu09g0089 . 5 160 Alfin-like Transcription Factor Family AT2G02470 75.3 1.4e-63 240.0
Clacu10g2174 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.5e-54 208.4
Clacu07g0425 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.0e-53 207.2
Clacu08g1146 . 135 301 Alfin-like Transcription Factor Family AT5G20510 77.4 2.5e-73 271.9
Clacu11g0303 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.8e-71 263.8
Clacu09g0089 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 9.2e-68 253.4
Clacu10g0742 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Clacu07g0425 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.1e-52 203.4
Clacu10g2174 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48174 PF12165 Alfin 1.50E-68 No_clan Clacu TF