Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1146 ATGATAACGACGACCACGGAATGTAACGAGAACAAGGAGTCAGGCTACGGCCACGTCGACTGTAGCCCAATGAAAAAAAGAAAAAAAAAAACGGAAAAAGCAAATTGGTGGGGACCACCCGCCACCTCAGCTAGGACCCACAAAAATTCATCCTTCAGATTAAAATTTCTGGGACCTCATCTAATCCACGAAGTCCAATCAGCCTTTACCGCTTCCTTCACTTTTAGGGCTTCATTCCCCAAATTCTCCACTCTTTATCGGCCCAAAATCCTCCCTTCCGGACTTTTCCCCTTTTTATCCAATTCATTTAATTTCACCTCTCTCCTCCGATTCAAATCCGCGTTCGTTTCTCTTTCTCTCTCTTCTTCCTTCTCCCACTGTCGTCTCTCAGAGTCAGAGGCTATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGCGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAAATGGTTCCATGGGAAGTGTGTCAAGATCACTCCGGCAAGGGCGGAGCACATTAAGCATCAAGTGGATAAGAGTGCTTTCAAAGGCAAGAAGAGCGGCGCGCATCTCATATCGGCCGAGGTTGTCTTCGGCCAGTTAGCGCAGTGGTGGCTATGGCTGTCCATGGTGGTGGTTTTTGGCAGTGGGCGGTGCTTGTCGGCGGCAGACATGGTGAAAGTGAAGGTGGAGAAATTTAGACAAAGATCATCAGATTCATCAGCCATGGCAAGCAGGGTTGAGGAAGAAGCACCAGCCCTAGCAACTGATGAAGATCAAATCTCAGAGAAGTCTTGGCAGAAGAGTGATAGAGAGTTTCTAATGGTAATGGTAACTTTCATCGCAACCGTTTCTTTCCAAGCCGGGACGAACCCTCCTGGTGGTGTTTGGCAAGACGATAACAACCCTAGGTATGAAGCAGGGAAATCAATAATGGCTTCAAAACAACCATCTCGGTTCCTGGGTTTCATCACCGGCGTAACAACGACGATGGTAGTTTCGGTGATGCAACTATTGGTGCTGATGAATGAGTTGCCATTCAAGAAATCATCAGTTTCCAGGAACTTCCTCCACTTTACTTTGGGCATCGCATTTACCTTCATGACTATCGCTTATTGTTCGTCGATAATAGCTTTGACGCCGCGGTCGCAGTTGCCGCAGATCATCGTTACGTTGCTCATCAATCTTGTGACTGGTGTTGTTGGACTCCTCATTTTGTTCTACATACAAAGTAGAGATGTGTTTGTTAAGTATATACTGGAATATCTAATCAACCATAGTGGAATGGAAGTAAATGGTAAAACTTCAAATGGGTTGACGGCTCTTGACATTCTAACTCAAACCCATAGAGCTTTAAAGGACATGGATATTGCAGAGACTCTCAGAGCTGCCAATGCCGTCCGAGCCAGAAACAAAAAAACCCGTCGCACAGACTCTTGTTATTAA 2043 44.84 MITTTTECNENKESGYGHVDCSPMKKRKKKTEKANWWGPPATSARTHKNSSFRLKFLGPHLIHEVQSAFTASFTFRASFPKFSTLYRPKILPSGLFPFLSNSFNFTSLLRFKSAFVSLSLSSSFSHCRLSESEAMDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHQVDKSAFKGKKSGAHLISAEVVFGQLAQWWLWLSMVVVFGSGRCLSAADMVKVKVEKFRQRSSDSSAMASRVEEEAPALATDEDQISEKSWQKSDREFLMVMVTFIATVSFQAGTNPPGGVWQDDNNPRYEAGKSIMASKQPSRFLGFITGVTTTMVVSVMQLLVLMNELPFKKSSVSRNFLHFTLGIAFTFMTIAYCSSIIALTPRSQLPQIIVTLLINLVTGVVGLLILFYIQSRDVFVKYILEYLINHSGMEVNGKTSNGLTALDILTQTHRALKDMDIAETLRAANAVRARNKKTRRTDSCY 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21538971 21553370 + ClG42_08g0114600.10 Clacu08g1146 255488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1146 680 MobiDBLite consensus disorder prediction 279 308 - -
Clacu08g1146 680 FunFam PHD finger alfin-like protein 326 377 - -
Clacu08g1146 680 PANTHER CPG BINDING PROTEIN 141 375 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Clacu08g1146 680 SUPERFAMILY FYVE/PHD zinc finger 323 371 IPR011011 -
Clacu08g1146 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 376 IPR013083 -
Clacu08g1146 680 MobiDBLite consensus disorder prediction 279 327 - -
Clacu08g1146 680 Pfam Domain of unknown function 464 576 IPR026961 -
Clacu08g1146 680 Pfam PHD-finger 334 372 IPR019787 -
Clacu08g1146 680 MobiDBLite consensus disorder prediction 440 460 - -
Clacu08g1146 680 CDD PHD_AL_plant 333 373 IPR044104 -
Clacu08g1146 680 Pfam Alfin 145 272 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1569 Clacu-Chr3:29272895 Clacu08g1146 Clacu-Chr8:21538971 3.30E-24 dispersed
Clacu08g1146 Clacu-Chr8:21538971 Clacu11g0303 Clacu-Chr11:2748373 5.90E-117 dispersed
Clacu08g1146 Clacu-Chr8:21538971 Clacu08g1147 Clacu-Chr8:21554892 1.20E-13 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48174 PF12165 Alfin 1.50E-68 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1146 K26274 - csv:101208889 432.95