Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1147 ATGGCAGAGAGTATTAGAAAGAGGCTTGATGAAGCCGCCATTGAAGGAAACGTAGCAACGTTGTTAGAATTACTCCAACAAGATCCAATGTTACTGGCCAGACTCAACCTTAACGACTTCAACGAGACTCCACTGCACGTGGCTTCTCTTCTTGGTCACGTGACATTTGTGGATGAGATTCTCAAGCGAAGGCCTCAGCTGGCCAGAGACTTGGATTCTCGCCGTTGTTCCGCCCTCCACTTGGCCGCCGCCGAGGGCTCTTTAGACATTGTGCAAATTCTGCTGCGAGTTGATCCTGATATGTGTTCTATCTGCAATGAAGACGGCCGGAATCCTATTCATCTCGCCGCCATGAGAGGCCGGGTTGATGTATTGGCCGAGCTCGTTCTAGTCAGACCGGCAGCCGCTCGAACTGCCGTGGACGGCGGGGGAACGGTGTTGCATTTATGTGTGAAGTTCAACCAGGTGGAGGCTTTGAAGATGTTGATTGAAACTATGGAAGTGAAAGAGAAAGACAATGATTTTATTAATACTCAGGATGATTATGGCTTCACTATCCTTCATTTAGCAGTCTCACACAAACAACTTCAGACCGTAGAATATCTAATCAACCATACTGGAATCGAAGTAAATGCAAAAACCTCAAATGGGTTAACACCTCTAGACATTCTAACTCAAAGCCAAAGAGATTTAAAGGACTTGGACATTGCAGAGACTCTCACAGCCGCCAATGCCATCCGCACCACAAACAAAAAACCGCCGCCGCCGCCGCCGTCTTCTTGTATCAAGATCAAAAACGAAAAGAGTTGTCAAACATGGAGATGGTTTTTTTCGGCCTTATTCCACAATGGGGATTGGTGGTTTATGAACGAAAAAAGCGAGTGGCTAATGAAGCAAGAGGCATTAATGGTTGTAGCATCCTTAATTGCAACAATGGCTTTTCAAGCCGGAGTGAACCCTCCCGGCGGCATTTGGCAAGACGACAAAGCGTCGGGAAATCCAAGACAGACTGCTGGAACGTCGGTGATGGCCGGAAAAGACAAAGAAACATACAATAAATATCTTGTGTCTAACACAGTAGGGTTCATGACTTCGTTCATAGCAATTGTGATGATTCTGATTGGGTTGCCTCAAAAACGTATTTTCATGAGGGTTTTGATCATGACAATGTGTGCTGCTGTGAGTGCCATGGCTTTCACTTATGGATATTCCATAAAGTTTTTCACTCCACTACCACCACAACCAACTGGAGCCTCCAACTCCACTTCTCCGCCTCCATCTCCACCTCCATCTCCACTTACCATCTGGCCGCGCCCCAAGTCGGACTCAGTCATCTCTTGGATTTCCATTATTGTGGCCATGGTGGTCACTTCTTCCATGGGGATTTTCTTGGTCGCCAAGCTCTTCTACGTTCATTCTCGACAGAATAAACCTACTGGACACCCGCTTCCTCGCCCATGA 1461 47.02 MAESIRKRLDEAAIEGNVATLLELLQQDPMLLARLNLNDFNETPLHVASLLGHVTFVDEILKRRPQLARDLDSRRCSALHLAAAEGSLDIVQILLRVDPDMCSICNEDGRNPIHLAAMRGRVDVLAELVLVRPAAARTAVDGGGTVLHLCVKFNQVEALKMLIETMEVKEKDNDFINTQDDYGFTILHLAVSHKQLQTVEYLINHTGIEVNAKTSNGLTPLDILTQSQRDLKDLDIAETLTAANAIRTTNKKPPPPPPSSCIKIKNEKSCQTWRWFFSALFHNGDWWFMNEKSEWLMKQEALMVVASLIATMAFQAGVNPPGGIWQDDKASGNPRQTAGTSVMAGKDKETYNKYLVSNTVGFMTSFIAIVMILIGLPQKRIFMRVLIMTMCAAVSAMAFTYGYSIKFFTPLPPQPTGASNSTSPPPSPPPSPLTIWPRPKSDSVISWISIIVAMVVTSSMGIFLVAKLFYVHSRQNKPTGHPLPRP 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21554892 21557509 - ClG42_08g0114700.10 Clacu08g1147 255489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1147 486 ProSiteProfiles Ankyrin repeat profile. 108 130 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 SMART ANK_2a 108 137 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 SMART ANK_2a 142 171 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 SMART ANK_2a 182 212 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 SMART ANK_2a 216 251 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 SMART ANK_2a 74 103 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 Pfam Domain of unknown function 298 404 IPR026961 -
Clacu08g1147 486 ProSiteProfiles Ankyrin repeat region circular profile. 108 129 - -
Clacu08g1147 486 Pfam Ankyrin repeats (many copies) 177 223 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 ProSiteProfiles Ankyrin repeat region circular profile. 74 101 - -
Clacu08g1147 486 SUPERFAMILY Ankyrin repeat 10 227 IPR036770 -
Clacu08g1147 486 ProSiteProfiles Ankyrin repeat profile. 74 101 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 MobiDBLite consensus disorder prediction 417 435 - -
Clacu08g1147 486 Gene3D - 3 254 IPR036770 -
Clacu08g1147 486 MobiDBLite consensus disorder prediction 414 435 - -
Clacu08g1147 486 PANTHER HOMEOBOX PROTEIN WARIAI 5 439 - -
Clacu08g1147 486 Pfam Ankyrin repeats (3 copies) 11 96 IPR002110 GO:0005515(InterPro)
Clacu08g1147 486 Pfam Ankyrin repeats (3 copies) 104 171 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1147 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g1396 Clacu-Chr7:28808475 Clacu08g1147 Clacu-Chr8:21554892 5.20E-09 dispersed
Clacu08g1147 Clacu-Chr8:21554892 Clacu08g1149 Clacu-Chr8:21566256 1.50E-13 dispersed
Clacu08g1146 Clacu-Chr8:21538971 Clacu08g1147 Clacu-Chr8:21554892 1.20E-13 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58