Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1154 ATGGAGGAAATGTCCCCCGCGGTTGTGGTGCCATTTAGGTTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGATTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTGGTATCACTAAAGTTTCGGGTATGAATGACAAGTGTGAAGGAGTTCCATTGTCAGTTGTGTTATCTCAAAATAATAGCAGTTGGGTTCCGGCAGATGAGTCAATATCCCATGGAAGTGAGGAAGATGATTCTTTATCTCTAGAGGGCGATCACATTTATGATAGCTCTTGTTCACATTCAGTGATTAGTGAGAATAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGATTCCATCAGCAATCCAAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAGACTAATGTTGAAAGTCTTGACTCTCAGATTGCGAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGATGGGCTAGGCACTGAAGCATGTAATAACACGGTTCTTCAGCTGCCTCTTGAGAAAAAGGCAAGCGAACCAGTCAGTCGAAGTGTTTTTGAGGTAGATTGTGTTCCCCTTTGGGGATTTACATCGGTTTGTGGAAGAAGACCCGAGATGGAAGATGCAGTGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGAGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTATGATGGTCATGGTGGCTCTCAGGTTGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCCGTTGGCAATGTTAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAACTGTTTTCTTAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTCTTGAGCCTGTTGCGCCAGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAAGAGCCAATGGCATTGTCTGTGGATCATAAACCAAACAGAGAAGACGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGGCATCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTGATGTTCCTCCCTCGGGCAAAAGACGACGAATGCCTCGTTCTAGCGAGTGATGGTTTATGGGATGTGATGACCAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTTTGGCACAAGAAGAATGGCGTTAGTTTGCCTTCTGAGAGGGGGGTGGGGATCGATCCCGCAGCACAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTTCAAAAGGGCAGCAAAGACAACATTACGATATATTCTTATATAAACACATATTTGCCTAGGTTTTTGAGGCGCGAGGACAAGAAGCGACTTCGTTGGCCGAGAAATTTATTTCCAAGAACCGCCTCGTCGTTCAGGCCGCTGTTGCTTCGCCGACGGCCATTTGATGGAGTGGTAATATCTCAATCAATGGGAATCAAGAGAGAGAGTAAAAGCTCCGCTTCTGCAACATCGCCGTGTGCTGATTTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCATTGGGATGAAGAACCCTGCGTCTCCGAGTGGCAGAAGTACAGAGCTTGCCTCTCTGAGCATTTGGATGATAAGAAGTTGAAGCGTTTCTTGGAAGAGGAAACGATTGTTCATTCTTCCATGAAAGCTGATGGGAGTCAAGAATCAAGATAG 2040 44.85 MEEMSPAVVVPFRLGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLIEVGSDDCKSSNGEEEVGITKVSGMNDKCEGVPLSVVLSQNNSSWVPADESISHGSEEDDSLSLEGDHIYDSSCSHSVISENSSICGDDFLGSEVSSFEAFDSISNPKDISSVEIAAKANIEETNVESLDSQIASSSSAAASLEEDVGDGLGTEACNNTVLQLPLEKKASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAVGNVKDNCQELWRKAFTNCFLKVDAEIGGGPGLEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITIYSYINTYLPRFLRREDKKRLRWPRNLFPRTASSFRPLLLRRRPFDGVVISQSMGIKRESKSSASATSPCADFRAAYHNCFNRWYSEKFVKGHWDEEPCVSEWQKYRACLSEHLDDKKLKRFLEEETIVHSSMKADGSQESR 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21589487 21594116 - ClG42_08g0115400.10 Clacu08g1154 255496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1154 679 Gene3D - 226 541 IPR036457 -
Clacu08g1154 679 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 604 654 - -
Clacu08g1154 679 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Clacu08g1154 679 SMART PP2C_4 229 541 IPR001932 -
Clacu08g1154 679 Pfam Uncharacterised protein family (UPF0203) 602 663 IPR007918 -
Clacu08g1154 679 CDD PP2Cc 241 538 IPR001932 -
Clacu08g1154 679 FunFam Protein phosphatase 2C 16 227 543 - -
Clacu08g1154 679 Pfam Protein phosphatase 2C 262 536 IPR001932 -
Clacu08g1154 679 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Clacu08g1154 679 PANTHER PROTEIN PHOSPHATASE 195 538 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Clacu08g1154 679 SUPERFAMILY PP2C-like 234 538 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu07g0046 Clacu-Chr7:784733 Clacu08g1154 Clacu-Chr8:21589487 7.70E-18 dispersed
Clacu07g1387 Clacu-Chr7:28696181 Clacu08g1154 Clacu-Chr8:21589487 5.80E-144 dispersed
Clacu08g1154 Clacu-Chr8:21589487 Clacu11g0816 Clacu-Chr11:8067644 3.80E-47 dispersed
Clacu08g1154 Clacu-Chr8:21589487 Clacu03g0119 Clacu-Chr3:1341008 1.20E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1154 K14497 - csv:101207918 1001.12