Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1162 ATGGAGGAAGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCAACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCGATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 51.77 MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21647363 21647785 + ClG42_08g0116200.10 Clacu08g1162 255504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1162 140 MobiDBLite consensus disorder prediction 90 114 - -
Clacu08g1162 140 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982(InterPro)
Clacu08g1162 140 MobiDBLite consensus disorder prediction 99 114 - -
Clacu08g1162 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Clacu08g1162 140 MobiDBLite consensus disorder prediction 121 140 - -
Clacu08g1162 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 106 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Clacu08g1162 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1162 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu06g1891 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 8.9e-89 323.6
Clacu09g1425 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Clacu03g1724 . 71 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.1 3.0e-52 202.2
Clacu03g1724 . 5 169 CCAAT-HAP5 Transcription Factor Family AT1G08970 71.1 4.6e-53 204.9
Clacu09g1425 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Clacu06g1891 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Clacu03g1724 . 12 218 CCAAT-HAP5 Transcription Factor Family AT1G54830 63.3 9.5e-61 230.3
Clacu09g1425 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Clacu06g1891 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Clacu06g1891 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Clacu06g1891 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.3e-81 297.4
Clacu09g1425 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.9e-49 193.0
Clacu03g1724 . 71 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 65.6 4.8e-48 188.3
Clacu09g1425 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Clacu03g1724 . 43 207 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 3.1e-50 195.3
Clacu06g1891 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.1e-50 194.9
Clacu08g1162 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.9e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48176 PF00808 CBFD_NFYB_HMF 1.40E-19 CL0012 Clacu TF