Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1174 ATGGACGATGGAGCAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCACCACCGCAGCACGACCCGGCGGCGCACCAGCAGCATCAGCATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAATATCTTTGGTAACATCTTCGAAGTTACGGCCAAGTACAAGCCTCCCATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCCGAGACCAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCTAAGAGAACTCTTCGTGAGATCAAGCTTCTTCGGCATATGGATCATGAAAACGTTGTTGCAATTAGGGATATCATACCTCCACCTCTTAGGGAAACATTCAATGATGTTTATATAGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCGGAGGAGCATTGTCAGTATTTCCTGTACCAGATTCTCCGTGGATTGAAGTACATACATTCAGCTAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGTGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTTATGACAGAATATGTGGTTACAAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCATTGTTTCCTGGTAGAGATCATGTGCATCAGTTGCGCTTGCTTTTGGAGCTGATTGGCACCCCATCAGAGGCTGATCTTGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAACTACCTCATTACCATCGTCAGTCATTCACTGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGATGCTCTTGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCGCTTACCGAGGAACAGATGAAAGAGCTGATCTATCTAGAGGCGCTTGCATTTAACCCCGAGTATCATCACCAATAA 1218 45.07 MDDGAASQPDDTVMSEAASVPPPQHDPAAHQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYLEALAFNPEYHHQ 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21726395 21733732 + ClG42_08g0117400.10 Clacu08g1174 255516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1174 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu08g1174 405 Pfam Protein kinase domain 77 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1174 405 MobiDBLite consensus disorder prediction 1 44 - -
Clacu08g1174 405 SMART serkin_6 72 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1174 405 Gene3D Phosphorylase Kinase; domain 1 55 393 - -
Clacu08g1174 405 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 65 390 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Clacu08g1174 405 Gene3D Transferase(Phosphotransferase) domain 1 156 384 - -
Clacu08g1174 405 FunFam Mitogen-activated protein kinase 156 384 - -
Clacu08g1174 405 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524(InterPro)
Clacu08g1174 405 CDD STKc_TEY_MAPK 65 400 - -
Clacu08g1174 405 SUPERFAMILY Protein kinase-like (PK-like) 77 365 IPR011009 -
Clacu08g1174 405 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu08g1174 405 FunFam Mitogen-activated protein kinase 57 166 - -
Clacu08g1174 405 MobiDBLite consensus disorder prediction 29 43 - -
Clacu08g1174 405 ProSitePatterns MAP kinase signature. 107 210 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0207 Clacu-Chr3:2290928 Clacu08g1174 Clacu-Chr8:21726395 2.90E-171 dispersed
Clacu06g0341 Clacu-Chr6:4147476 Clacu08g1174 Clacu-Chr8:21726395 2.30E-160 dispersed
Clacu08g1174 Clacu-Chr8:21726395 Clacu08g1641 Clacu-Chr8:26159707 5.20E-113 dispersed
Clacu04g1264 Clacu-Chr4:26742201 Clacu08g1174 Clacu-Chr8:21726395 2.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73763 PF00069 Pkinase 3.40E-73 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1174 K14512 - csv:101204301 801.586