Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1185 ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCAATCTCAACGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACAGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACTCACCACCCACAACTAACATTAACCCTCCCCCCACTCCCAATGACCAGCCACACGATTTGGCTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCGTCCCACCCGCCATGATGCGTAGAACATAA 876 48.74 MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFQSQRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKQPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHSPPTTNINPPPTPNDQPHDLAPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIVPPAMMRRT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21832800 21837596 - ClG42_08g0118500.10 Clacu08g1185 255527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1185 291 MobiDBLite consensus disorder prediction 220 278 - -
Clacu08g1185 291 MobiDBLite consensus disorder prediction 1 26 - -
Clacu08g1185 291 Gene3D WRKY domain 122 188 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1185 291 MobiDBLite consensus disorder prediction 47 118 - -
Clacu08g1185 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 230 IPR044810 GO:0003700(InterPro)
Clacu08g1185 291 SUPERFAMILY WRKY DNA-binding domain 127 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1185 291 MobiDBLite consensus disorder prediction 47 62 - -
Clacu08g1185 291 FunFam WRKY transcription factor 57 121 195 - -
Clacu08g1185 291 MobiDBLite consensus disorder prediction 247 274 - -
Clacu08g1185 291 MobiDBLite consensus disorder prediction 83 101 - -
Clacu08g1185 291 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1185 291 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu08g1185 291 SMART WRKY_cls 135 194 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu02g0102 Clacu-Chr2:1091435 Clacu08g1185 Clacu-Chr8:21832800 1.20E-27 dispersed
Clacu04g0855 Clacu-Chr4:22880705 Clacu08g1185 Clacu-Chr8:21832800 8.30E-21 dispersed
Clacu08g1185 Clacu-Chr8:21832800 Clacu09g2269 Clacu-Chr9:37434207 9.80E-37 dispersed
Clacu08g1185 Clacu-Chr8:21832800 Clacu06g0428 Clacu-Chr6:5063751 5.50E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48177 PF03106 WRKY 8.80E-25 CL0274 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1185 - - - 0.0