Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1197 ATGTCTTCCGCCGAGAAGGAAAGAGAGACCCAGGTGTACATGGCCAAGCTCGCCGAGCAGGCCGAACGCTATGACGAAATGGTTGAGTGTATGAAGAATATTGCAAAACTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGATACAAAAATGTCATAGGTGCCCGACGAGCTTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGAGTTACCGCCAGAAAGTGGAGGAGGAGCTTTCAAAGATTTGTGGTGACATTCTCTCTATCATAGACAAGCATCTAATCCCTCATTCATCCTCTGCAGAAGCCACCGTTTTCTACTACAAGATGAAAGGTGACTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAATCGTTGAAGGGATATGAGGCTGCCTCAGGCACTGCGAATACCGAACTCCCATCAACCCACCCAATCCGTCTTGGCCTTGCACTCAATTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGACAACCTCACCCTCTGGACCTCAGATTTGCCTGAAGATGGCGGTGACGAAAACTTCAAAGCTGAGGAATCCAAACCTGCGGAACCTGAGGCTCAGCAAGCCAAATGA 795 45.91 MSSAEKERETQVYMAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKSYRQKVEEELSKICGDILSIIDKHLIPHSSSAEATVFYYKMKGDYYRYLAEFKTDQDRKEAADQSLKGYEAASGTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENFKAEESKPAEPEAQQAK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21916373 21919129 - ClG42_08g0119700.10 Clacu08g1197 255539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1197 264 PIRSF 14-3-3 2 248 IPR000308 -
Clacu08g1197 264 Pfam 14-3-3 protein 14 236 IPR023410 -
Clacu08g1197 264 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Clacu08g1197 264 Coils Coil 14 34 - -
Clacu08g1197 264 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Clacu08g1197 264 SMART 1433_4 8 249 IPR023410 -
Clacu08g1197 264 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
Clacu08g1197 264 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu08g1197 264 MobiDBLite consensus disorder prediction 238 264 - -
Clacu08g1197 264 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Clacu08g1197 264 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Clacu08g1197 264 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Clacu08g1197 264 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Clacu08g1197 264 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Clacu08g1197 264 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Clacu08g1197 264 MobiDBLite consensus disorder prediction 242 258 - -
Clacu08g1197 264 FunFam 14-3-3 protein epsilon 3 250 - -
Clacu08g1197 264 Gene3D - 1 249 IPR036815 -
Clacu08g1197 264 Coils Coil 196 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1197 K06630 - - csv:101221858 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g2574 Clacu-Chr5:33656379 Clacu08g1197 Clacu-Chr8:21916373 4.00E-130 dispersed
Clacu07g0270 Clacu-Chr7:3060643 Clacu08g1197 Clacu-Chr8:21916373 8.60E-109 dispersed
Clacu08g1197 Clacu-Chr8:21916373 Clacu11g1597 Clacu-Chr11:27133711 2.10E-102 dispersed
Clacu08g1197 Clacu-Chr8:21916373 Clacu08g1267 Clacu-Chr8:22633043 2.40E-106 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu08g1281 . 4 242 14-3-3 family AT4G09000 90.8 6.6e-119 424.1
Clacu11g1607 . 5 242 14-3-3 family AT4G09000 90.3 3.3e-118 421.8
Clacu07g1632 . 6 241 14-3-3 family AT4G09000 86.9 1.2e-112 403.3
Clacu11g1631 . 11 247 14-3-3 family AT4G09000 76.8 7.3e-102 367.5
Clacu08g1338 . 3 246 14-3-3 family AT4G09000 73.4 2.9e-98 355.5
Clacu07g0270 . 7 238 14-3-3 family AT4G09000 72.6 4.7e-93 338.2
Clacu05g2574 . 4 239 14-3-3 family AT4G09000 72.3 1.5e-91 333.2
Clacu08g1197 . 4 239 14-3-3 family AT4G09000 71.8 7.6e-91 330.9
Clacu11g1597 . 5 236 14-3-3 family AT4G09000 73.5 2.2e-90 329.3
Clacu08g1267 . 5 236 14-3-3 family AT4G09000 70.1 1.4e-89 326.6
Clacu08g1281 . 6 261 14-3-3 family AT1G78300 89.8 1.5e-124 442.6
Clacu11g1607 . 5 258 14-3-3 family AT1G78300 91.0 1.5e-124 442.6
Clacu07g1632 . 6 253 14-3-3 family AT1G78300 87.1 5.0e-117 417.5
Clacu11g1631 . 11 246 14-3-3 family AT1G78300 76.7 3.9e-101 364.8
Clacu08g1338 . 11 247 14-3-3 family AT1G78300 75.5 1.6e-99 359.4
Clacu07g0270 . 7 247 14-3-3 family AT1G78300 71.6 2.0e-94 342.4
Clacu08g1197 . 8 257 14-3-3 family AT1G78300 70.6 5.0e-93 337.8
Clacu05g2574 . 8 255 14-3-3 family AT1G78300 70.8 8.6e-93 337.0
Clacu08g1267 . 1 250 14-3-3 family AT1G78300 67.9 5.6e-92 334.3
Clacu11g1597 . 1 243 14-3-3 family AT1G78300 69.4 1.8e-90 329.3
Clacu07g1632 . 6 259 14-3-3 family AT5G38480 90.6 7.1e-124 440.3
Clacu08g1281 . 6 252 14-3-3 family AT5G38480 85.8 1.0e-114 409.8
Clacu11g1607 . 6 252 14-3-3 family AT5G38480 85.4 2.3e-114 408.7
Clacu11g1631 . 10 252 14-3-3 family AT5G38480 73.7 2.7e-99 358.6
Clacu08g1338 . 10 251 14-3-3 family AT5G38480 74.0 3.3e-97 351.7
Clacu05g2574 . 8 255 14-3-3 family AT5G38480 73.6 4.5e-94 341.3
Clacu07g0270 . 7 247 14-3-3 family AT5G38480 72.4 2.2e-93 339.0
Clacu08g1267 . 5 247 14-3-3 family AT5G38480 72.2 6.5e-93 337.4
Clacu08g1197 . 8 255 14-3-3 family AT5G38480 72.0 8.4e-93 337.0
Clacu11g1597 . 5 248 14-3-3 family AT5G38480 71.5 3.0e-90 328.6
Clacu08g1281 . 3 242 14-3-3 family AT1G35160 90.0 1.4e-118 422.9
Clacu11g1607 . 4 242 14-3-3 family AT1G35160 89.5 6.7e-118 420.6
Clacu07g1632 . 6 240 14-3-3 family AT1G35160 86.8 5.5e-112 401.0
Clacu11g1631 . 11 246 14-3-3 family AT1G35160 77.5 1.2e-101 366.7
Clacu08g1338 . 1 246 14-3-3 family AT1G35160 73.2 4.5e-98 354.8
Clacu07g0270 . 2 237 14-3-3 family AT1G35160 71.4 1.3e-92 336.7
Clacu05g2574 . 8 239 14-3-3 family AT1G35160 73.1 2.4e-91 332.4
Clacu08g1197 . 8 239 14-3-3 family AT1G35160 72.6 1.2e-90 330.1
Clacu11g1597 . 5 236 14-3-3 family AT1G35160 73.5 2.7e-90 328.9
Clacu08g1267 . 5 236 14-3-3 family AT1G35160 69.7 1.3e-89 326.6
Clacu07g1632 . 5 254 14-3-3 family AT5G16050 86.4 2.3e-117 418.7
Clacu08g1281 . 3 253 14-3-3 family AT5G16050 79.3 1.2e-108 389.8
Clacu11g1607 . 4 251 14-3-3 family AT5G16050 79.5 5.4e-106 380.9
Clacu08g1338 . 10 248 14-3-3 family AT5G16050 71.1 2.0e-92 335.9
Clacu11g1631 . 10 244 14-3-3 family AT5G16050 71.1 8.3e-91 330.5
Clacu08g1197 . 3 246 14-3-3 family AT5G16050 66.3 2.3e-85 312.4
Clacu07g0270 . 1 246 14-3-3 family AT5G16050 65.5 5.2e-85 311.2
Clacu05g2574 . 3 246 14-3-3 family AT5G16050 65.0 8.9e-85 310.5
Clacu08g1267 . 2 247 14-3-3 family AT5G16050 64.9 2.0e-84 309.3
Clacu11g1597 . 5 242 14-3-3 family AT5G16050 66.7 2.4e-82 302.4
Clacu08g1338 . 1 246 14-3-3 family AT5G10450 85.8 4.2e-114 407.9
Clacu11g1631 . 9 246 14-3-3 family AT5G10450 85.7 6.7e-112 400.6
Clacu11g1607 . 1 242 14-3-3 family AT5G10450 79.4 1.3e-104 376.3
Clacu08g1281 . 3 251 14-3-3 family AT5G10450 76.8 1.8e-104 375.9
Clacu07g1632 . 7 259 14-3-3 family AT5G10450 74.0 3.3e-103 371.7
Clacu07g0270 . 1 238 14-3-3 family AT5G10450 67.6 5.1e-88 321.2
Clacu08g1267 . 5 236 14-3-3 family AT5G10450 67.2 2.4e-85 312.4
Clacu11g1597 . 5 236 14-3-3 family AT5G10450 68.1 5.3e-85 311.2
Clacu05g2574 . 3 239 14-3-3 family AT5G10450 66.3 7.0e-85 310.8
Clacu08g1197 . 3 239 14-3-3 family AT5G10450 65.4 2.2e-83 305.8
Clacu07g1632 . 4 261 14-3-3 family AT3G02520 91.5 1.7e-128 455.7
Clacu08g1281 . 6 252 14-3-3 family AT3G02520 87.1 7.9e-118 420.2
Clacu11g1607 . 5 258 14-3-3 family AT3G02520 84.8 5.1e-117 417.5
Clacu08g1338 . 10 248 14-3-3 family AT3G02520 75.7 7.4e-100 360.5
Clacu11g1631 . 10 244 14-3-3 family AT3G02520 76.6 7.4e-100 360.5
Clacu08g1197 . 8 257 14-3-3 family AT3G02520 69.4 3.0e-93 338.6
Clacu05g2574 . 8 256 14-3-3 family AT3G02520 68.9 3.9e-93 338.2
Clacu08g1267 . 1 249 14-3-3 family AT3G02520 69.4 1.5e-92 336.3
Clacu07g0270 . 4 238 14-3-3 family AT3G02520 71.7 1.7e-91 332.8
Clacu11g1597 . 1 241 14-3-3 family AT3G02520 72.0 1.7e-91 332.8
Clacu08g1338 . 9 246 14-3-3 family AT5G65430 88.7 1.2e-115 412.9
Clacu11g1631 . 9 247 14-3-3 family AT5G65430 84.1 2.9e-112 401.7
Clacu11g1607 . 1 242 14-3-3 family AT5G65430 80.2 4.4e-105 377.9
Clacu08g1281 . 8 242 14-3-3 family AT5G65430 80.5 8.3e-104 373.6
Clacu07g1632 . 7 241 14-3-3 family AT5G65430 79.2 1.1e-103 373.2
Clacu07g0270 . 1 238 14-3-3 family AT5G65430 69.3 2.0e-89 325.9
Clacu05g2574 . 8 239 14-3-3 family AT5G65430 69.8 4.2e-87 318.2
Clacu08g1267 . 5 236 14-3-3 family AT5G65430 69.4 1.6e-86 316.2
Clacu11g1597 . 5 236 14-3-3 family AT5G65430 69.8 2.7e-86 315.5
Clacu08g1197 . 8 239 14-3-3 family AT5G65430 68.5 8.7e-85 310.5
Clacu07g0270 . 1 261 14-3-3 family AT2G42590 81.4 6.3e-118 420.6
Clacu05g2574 . 6 264 14-3-3 family AT2G42590 73.8 5.2e-104 374.4
Clacu08g1267 . 3 242 14-3-3 family AT2G42590 77.9 5.2e-104 374.4
Clacu08g1197 . 6 253 14-3-3 family AT2G42590 75.4 9.8e-103 370.2
Clacu11g1597 . 3 245 14-3-3 family AT2G42590 74.9 1.1e-101 366.7
Clacu07g1632 . 8 248 14-3-3 family AT2G42590 73.0 1.3e-91 333.2
Clacu08g1281 . 8 248 14-3-3 family AT2G42590 70.5 3.8e-91 331.6
Clacu11g1607 . 8 245 14-3-3 family AT2G42590 71.4 1.9e-90 329.3
Clacu11g1631 . 11 244 14-3-3 family AT2G42590 66.7 6.6e-83 304.3
Clacu08g1338 . 11 248 14-3-3 family AT2G42590 64.7 1.6e-81 299.7
Clacu08g1267 . 1 241 14-3-3 family AT1G22300 80.5 9.5e-105 376.7
Clacu07g0270 . 6 242 14-3-3 family AT1G22300 78.5 1.8e-103 372.5
Clacu05g2574 . 5 244 14-3-3 family AT1G22300 77.5 3.4e-102 368.2
Clacu08g1197 . 5 244 14-3-3 family AT1G22300 76.7 1.7e-101 365.9
Clacu11g1597 . 1 241 14-3-3 family AT1G22300 76.8 1.2e-99 359.8
Clacu07g1632 . 4 246 14-3-3 family AT1G22300 70.4 3.5e-91 331.6
Clacu08g1281 . 8 246 14-3-3 family AT1G22300 70.3 9.5e-89 323.6
Clacu11g1607 . 8 245 14-3-3 family AT1G22300 69.3 2.3e-87 318.9
Clacu11g1631 . 11 253 14-3-3 family AT1G22300 65.4 3.3e-81 298.5
Clacu08g1338 . 11 248 14-3-3 family AT1G22300 64.7 3.1e-79 292.0
Clacu07g0270 . 6 246 14-3-3 family AT1G34760 80.5 2.5e-105 378.6
Clacu08g1267 . 1 245 14-3-3 family AT1G34760 80.4 5.6e-105 377.5
Clacu05g2574 . 5 247 14-3-3 family AT1G34760 80.2 9.5e-105 376.7
Clacu08g1197 . 5 247 14-3-3 family AT1G34760 79.4 6.2e-104 374.0
Clacu11g1597 . 1 244 14-3-3 family AT1G34760 77.9 7.1e-100 360.5
Clacu07g1632 . 4 250 14-3-3 family AT1G34760 70.9 1.1e-89 326.6
Clacu08g1281 . 8 245 14-3-3 family AT1G34760 72.3 5.6e-89 324.3
Clacu11g1607 . 8 249 14-3-3 family AT1G34760 69.4 4.8e-88 321.2
Clacu11g1631 . 11 246 14-3-3 family AT1G34760 64.4 6.2e-80 294.3
Clacu08g1338 . 11 247 14-3-3 family AT1G34760 64.1 5.8e-78 287.7
Clacu05g2574 . 2 254 14-3-3 family AT1G26480 86.6 1.6e-118 422.5
Clacu08g1197 . 2 254 14-3-3 family AT1G26480 85.8 8.0e-118 420.2
Clacu07g0270 . 3 242 14-3-3 family AT1G26480 80.8 4.4e-108 387.9
Clacu08g1267 . 2 249 14-3-3 family AT1G26480 77.0 7.8e-105 377.1
Clacu11g1597 . 3 242 14-3-3 family AT1G26480 77.9 6.8e-101 364.0
Clacu08g1281 . 8 260 14-3-3 family AT1G26480 72.0 5.2e-93 337.8
Clacu11g1607 . 8 247 14-3-3 family AT1G26480 73.8 1.3e-91 333.2
Clacu07g1632 . 5 256 14-3-3 family AT1G26480 72.0 2.2e-91 332.4
Clacu11g1631 . 11 244 14-3-3 family AT1G26480 67.5 6.4e-83 304.3
Clacu08g1338 . 11 244 14-3-3 family AT1G26480 66.2 2.3e-80 295.8
Clacu05g2574 . 5 237 14-3-3 family AT1G78220 52.6 9.4e-65 243.8
Clacu07g0270 . 6 236 14-3-3 family AT1G78220 51.3 1.0e-63 240.4
Clacu08g1267 . 1 234 14-3-3 family AT1G78220 50.6 8.8e-63 237.3
Clacu08g1197 . 5 237 14-3-3 family AT1G78220 50.9 2.0e-62 236.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148