Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1201 ATGGATGTCTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATCAAGAAGGGAACTCAGAGGTTTTGGAACTTGAGAAGGCTACAATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAACTATGCAAGCGTCTCAAAGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1143 41.12 MDVSRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21944714 21948375 - ClG42_08g0120100.10 Clacu08g1201 255543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1201 380 Coils Coil 169 189 - -
Clacu08g1201 380 Gene3D - 4 88 - -
Clacu08g1201 380 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 377 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Clacu08g1201 380 Gene3D Magnesium transport protein CorA, transmembrane region 91 311 - -
Clacu08g1201 380 Pfam Magnesium transporter MRS2-like 20 206 - -
Clacu08g1201 380 CDD Mrs2_Mfm1p-like 17 377 IPR039204 -
Clacu08g1201 380 FunFam Magnesium transporter MRS2-1 5 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1201 K16075 - - csv:101220835 657.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1201 Clacu-Chr8:21944714 Clacu10g1283 Clacu-Chr10:25696533 1.20E-106 dispersed
Clacu08g1201 Clacu-Chr8:21944714 Clacu07g0056 Clacu-Chr7:921929 9.10E-67 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G16010 85.2 4.0e-207 717.6
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G16010 52.4 2.1e-107 386.3
Clacu06g0654 . 1 359 MRS2 Gene Family AT5G64560 79.9 1.6e-156 549.3
Clacu07g0056 . 780 1151 MRS2 Gene Family AT5G64560 69.2 6.2e-132 467.6
Clacu02g0739 . 14 495 MRS2 Gene Family AT3G19640 64.4 3.0e-155 545.4
Clacu02g0026 . 59 386 MRS2 Gene Family AT3G58970 69.9 4.2e-116 415.2
Clacu05g1105 . 1 177 MRS2 Gene Family AT3G58970 71.3 8.3e-64 241.5
Clacu08g1201 . 6 380 MRS2 Gene Family AT2G03620 68.4 4.1e-137 485.0
Clacu10g1283 . 13 447 MRS2 Gene Family AT2G03620 53.0 1.2e-112 403.7
Clacu06g0654 . 1 321 MRS2 Gene Family AT5G09690 77.2 1.0e-127 453.4
Clacu07g0056 . 780 1113 MRS2 Gene Family AT5G09690 64.2 1.1e-108 390.2
Clacu10g1283 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.7e-78 288.1
Clacu06g0654 . 23 281 MRS2 Gene Family AT5G09720 69.1 7.2e-88 320.9
Clacu07g0056 . 815 1073 MRS2 Gene Family AT5G09720 62.0 2.2e-76 282.7
Clacu10g1283 . 1 447 MRS2 Gene Family AT1G80900 83.2 7.3e-201 696.8
Clacu08g1201 . 6 380 MRS2 Gene Family AT1G80900 54.2 4.0e-106 382.1
Clacu01g1466 . 16 424 MRS2 Gene Family AT5G22830 68.4 8.5e-144 507.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34