Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1201 ATGGATGTCTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATCAAGAAGGGAACTCAGAGGTTTTGGAACTTGAGAAGGCTACAATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAACTATGCAAGCGTCTCAAAGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1143 41.12 MDVSRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYKSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21944714 21948375 - ClG42_08g0120100.10 Clacu08g1201 255543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1201 380 Coils Coil 169 189 - -
Clacu08g1201 380 Gene3D - 4 88 - -
Clacu08g1201 380 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 6 377 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Clacu08g1201 380 Gene3D Magnesium transport protein CorA, transmembrane region 91 311 - -
Clacu08g1201 380 Pfam Magnesium transporter MRS2-like 20 206 - -
Clacu08g1201 380 CDD Mrs2_Mfm1p-like 17 377 IPR039204 -
Clacu08g1201 380 FunFam Magnesium transporter MRS2-1 5 88 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1201 Clacu-Chr8:21944714 Clacu10g1283 Clacu-Chr10:25696533 1.20E-106 dispersed
Clacu08g1201 Clacu-Chr8:21944714 Clacu07g0056 Clacu-Chr7:921929 9.10E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1201 K16075 - csv:101220835 657.907