Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1204 ATGCCGAGTATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATATGATTTGACTTCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGTTGATGGAGAAGTTCTATATCGGCGTGCTTGATACATCTCCCTCGGATAGCCTAGAACTTGAAACGAAACAAGTAGACGGTTATGCAGCTCGGTTTCAGGCCTTGACAAAGCAATACTGGAAGGCTCCTGTTGCAGTACTTGGTATTTCTGTGGTAGTTGGCTGTCTATACTTGCGCAAGAAGTGA 396 45.71 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGVLDTSPSDSLELETKQVDGYAARFQALTKQYWKAPVAVLGISVVVGCLYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21965189 21967019 + ClG42_08g0120400.10 Clacu08g1204 255546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1204 131 SMART Cyt_b5_2 8 81 IPR001199 -
Clacu08g1204 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Clacu08g1204 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Clacu08g1204 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Clacu08g1204 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Clacu08g1204 131 FunFam Cytochrome b5 type B 3 85 - -
Clacu08g1204 131 PANTHER CYTOCHROME B5 6 129 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Clacu08g1204 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Clacu08g1204 131 Gene3D - 5 93 IPR036400 -
Clacu08g1204 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Clacu08g1204 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Clacu08g1204 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 84 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g0801 Clacu-Chr6:9626866 Clacu08g1204 Clacu-Chr8:21965189 1.80E-25 dispersed
Clacu07g0185 Clacu-Chr7:2289883 Clacu08g1204 Clacu-Chr8:21965189 3.70E-23 dispersed
Clacu08g1204 Clacu-Chr8:21965189 Clacu11g0355 Clacu-Chr11:3210267 4.70E-15 dispersed
Clacu08g1204 Clacu-Chr8:21965189 Clacu05g0379 Clacu-Chr5:3246844 9.20E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1204 K23490 - csv:101220127 243.047