Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1210 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGAAGGCAGCAACTTGCAGCTTCTGAATCTGAATTTTCCCATGAAAATTGGACTCTCGAATACTACAGACTCAAGTCTAAAGTCGAACTTTTACAAAGAAACAACAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTTAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCAAGAAAAAACCAACTTATGTATGATTCCATCTCTGCACTTCAAAGAAAGGAAAGAGCAATTCAGGAGCAAAATGCCTTATTGGCTAAGCAGATAAAGGAGAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTTTTATTCCCACCACCTCCTCATCCCTCTCTAAACATTGGGCTTGCAAGTTTTGAAGGTCACCAATGA 672 39.43 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQLAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPPPPHPSLNIGLASFEGHQ 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22032334 22038224 + ClG42_08g0121000.10 Clacu08g1210 255552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1210 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu08g1210 223 Coils Coil 127 147 - -
Clacu08g1210 223 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Clacu08g1210 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g1210 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu08g1210 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu08g1210 223 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu08g1210 223 Coils Coil 153 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g1218 Clacu-Chr4:26338710 Clacu08g1210 Clacu-Chr8:22032334 3.70E-69 dispersed
Clacu07g1610 Clacu-Chr7:30661794 Clacu08g1210 Clacu-Chr8:22032334 8.50E-42 dispersed
Clacu07g1611 Clacu-Chr7:30684055 Clacu08g1210 Clacu-Chr8:22032334 4.10E-60 dispersed
Clacu08g0065 Clacu-Chr8:1432424 Clacu08g1210 Clacu-Chr8:22032334 9.40E-26 dispersed
Clacu08g1210 Clacu-Chr8:22032334 Clacu11g1657 Clacu-Chr11:27790692 2.50E-32 dispersed
Clacu08g1209 Clacu-Chr8:22017787 Clacu08g1210 Clacu-Chr8:22032334 2.50E-18 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48178 PF01486 K-box 2.60E-29 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1210 K09264 - csv:101219414 391.734