Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1219 ATGAGAACGGGGAAAAGCAATCAGGACGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAATATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTAAAAAATGGTTCCGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGACAATAGCATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTTAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATTTACATGCTTCTATCCGTAGTGATGGCGTTCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACAACTGAGTGTCCCATCACCAACAATGCATCAAATCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGATTGGATTTGTCGCAAGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCAGCCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCGAAAAAGCGGCTAAGAACATGA 999 44.54 MRTGKSNQDDEEYEEDELVAKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNSISISPAMLASSQNPLDSHLGRDILQDADITNKVPLPMSLEGNLHASIRSDGVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSSHPAMANVGDLGSGDDSEQAKKRLRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22097609 22102846 - ClG42_08g0121900.10 Clacu08g1219 255561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1219 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 332 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Clacu08g1219 332 MobiDBLite consensus disorder prediction 44 62 - -
Clacu08g1219 332 MobiDBLite consensus disorder prediction 297 332 - -
Clacu08g1219 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Clacu08g1219 332 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Clacu08g1219 332 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Clacu08g1219 332 FunFam BHLH domain class transcription factor 47 119 - -
Clacu08g1219 332 MobiDBLite consensus disorder prediction 23 43 - -
Clacu08g1219 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Clacu08g1219 332 CDD bHLH_AtBIM_like 48 124 - -
Clacu08g1219 332 MobiDBLite consensus disorder prediction 1 62 - -
Clacu08g1219 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu06g1640 Clacu-Chr6:27167166 Clacu08g1219 Clacu-Chr8:22097609 2.20E-58 dispersed
Clacu07g1617 Clacu-Chr7:30730921 Clacu08g1219 Clacu-Chr8:22097609 1.20E-51 dispersed
Clacu04g1212 Clacu-Chr4:26305895 Clacu08g1219 Clacu-Chr8:22097609 3.70E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48179 PF00010 HLH 1.80E-13 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1219 - - - 0.0