Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1226 ATGGCTCTTTTACAACCCCCAAAACCCCTTCAAATCGCCTCCAATCTCTTCCCCATCTGTAATTTTAGCTCCATTCGACCTTCCATTTCAATTCCTTTCTCATCCTCAAAAACCCATCATCAAAATGCGCTTCTTTCCTCTTCCACCACCAGCAGAACCTTCTCACTCTCAACCTCTCCAAGAAGGATTTTGTGCGAACCCCCTAAAGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACGGCTGCCGAAGTGCAGGAGTTAGTGAAGGGGGAAAGAAATGTGCCGCTTATAATTGATTTTTATGCAACATGGTGTGGTCCCTGCATTCTAATGGCTCAAGAACTTGAAATGCTCGCTGTAGAGTACGAGAACAATGCAATGATCATCAAGGTCGATACAGATGACGAATATGAATTTTCACGTGATATGCAGGTTAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACTGAAGGTGCATCAAGCACACCTCTCGTCAACACTACTGGAAATTGGGGGGCTCCAAATCCGTACAAGACCGTCTTAGATCCTTCGATGGAGTTTCCGGGCCTCCTGAAAGAGAAAGAGAGAGGATCAAGGGATGTGGTCCACCAATACAACCATGCTTTCAAAGGGTTTTCAGCAATGCTAACTGAGGAAGAAGCTTCTTCTCTGTCTGGTATTGATGGAATCGTGTCGGTGTTCCCTGATCCGACGCTTCACCTCCACACTACACGTTCTTGGGATTTCTTGGACTCCATCTCCGGCCTCCGCCCTCCCACGCCACTTCCGCCGCCGCATTCTTACCCCAGTACATCGGATGTCATCGTCGGCGTCATTGACACCGGGATTTGGCCGGAGTCTCAATCTTTCAACGATGAGGGGATTGGAGAAATTCCATCTAAATGGAAAGGAGTCTGTATGGAGGCACCTGATTTCAAGAAGTCTAATTGCAACAGGAAGTTGATAGGTGCAAGATACTATAATGTTATAGAACTCAATGGGAATGATAGCCATGTGGGGGCTCCGAAGGGCACACCGAGGGATTCGCTCGGCCATGGGACCCACACTGCGTCGATAGCAGCCGGAGCCAGAGTCCCCAATGCAAGTTACTTTGGCTTAGCGAGAGGGACGGCGAGAGGCGGTGGCATTCCTTCCACAAGGATTGCAAGCTATAAGGTTTGTGCTGGTGTTGGATGCTCTGGTGCTGCAATTCTCAAAGCCATTGATGATGCAGTTAGGGATGGAGTTGATATCATTTCGATCTCGATTGGGATTGGTTCCCCTTTGTTTCAATCTGATTATTTGAATGACCCAATTGCCATTGGAGCATTCCATGCCCAACTAATGGGAGTTTTGGTTGTCTGCTCTGGTGGGAATGATGGCCCTGACCCTAACACTGTGGGGAACGTTGCTCCTTGGATTTTCACTGTTGCTGCTTCTAATATTGACAGGGATTTCCAGTCCTCTGTGGTTCTTGGCAATGGGAAGACTTTTCATGGGACTGCTATAAATCTCTCAAATCTTACTAGCTCAAAGACTTATCCTCTTGTATTTGGAAAGGACGCTGCTGCTAAATTCACACCCGTATCAGAAGCAAGGAATTGTTATCCAGGATCGCTGGATCGATCAAAAGTTGCAGGCAAGATTGTCGTTTGTGCCTCTGATGACTTCAGTACTTCAAGGACAATAAAGGAACTGGTCGTTCAAGATGCTAAAGCCATGGGGTTAATACTGATCAATGAGGCATCAAAAACTGTGCCAATGGATTCAAACATTTTCCCATTTACACAAATTGGGAATTCAGATGGTCTTCAGATTCTTGAGTACATTAACTCCACCAAGAACCCAACAGCCACAATTCTCAGAACAGTGGAAGTTCAAAGACTCAAACCGGCTCCAATTGTGGCTTATTTCTCATCGAGAGGCCCATCTCCACTTACCGAAAACATTCTCAAGCCGGATATTACAGCTCCGGGAGTATCCATTTTAGCAGCTATGATTCCAAAGAGTGATGGAGATAGTGGTCCAATTGGTAAGAAGCCTTCCAATTATGCAATGAGATCCGGGACGTCAATGGCATGCCCTCATGTAGCAGGCGCTGCTGCATTCATCAAATCGGTTTATCACGACTGGAGTTCTTCCATGATCAAATCTGCACTCATGACAACAGCAACTCAATACGATAATCAAAGGAAATTCATGAGAAACAGCACAAACAACCCTTCAAACCCACATGAGATGGGAGCTGGAGAAATAAGCCCCATAAAAGCTCTTAATCCTGGATTGGTTTTCGAAACTACGAACGAAGATTATCTTCGTTTCCTCTGTTATTATGGGTATTCAAACAAGGTCATAAGATCTGTGTCGAAACAAAACTTCAGCTGTCCGAAAACTTCAAAAGAAGATCTTATCTCCAATGTCAATTATCCATCCATCTCCATTGGAAAACTAGACAGTAAACAAGCTGCCAAAGTAATAGAAAGAACTGTGACAAACGTAGGAGCTCCAGATGCCACTTACATTGCCAAGGTTCATTCTTCAGAGGGTTTAATAGTGAAAGTGAATCCAAGGAAGATTGTTTTCTCTGAGAAGGTAAAGAAAGTGACCTTCAAAGTTTCATTTTACGGCAAGGAGGCTCGCAGCGGCTACAACTTCGGGACGATCACGTGGCGGGACACTGCACATTCCGTTCGAACTTTTTTTGCTGTAAATGTAATATAA 2757 45.16 MALLQPPKPLQIASNLFPICNFSSIRPSISIPFSSSKTHHQNALLSSSTTSRTFSLSTSPRRILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGASSTPLVNTTGNWGAPNPYKTVLDPSMEFPGLLKEKERGSRDVVHQYNHAFKGFSAMLTEEEASSLSGIDGIVSVFPDPTLHLHTTRSWDFLDSISGLRPPTPLPPPHSYPSTSDVIVGVIDTGIWPESQSFNDEGIGEIPSKWKGVCMEAPDFKKSNCNRKLIGARYYNVIELNGNDSHVGAPKGTPRDSLGHGTHTASIAAGARVPNASYFGLARGTARGGGIPSTRIASYKVCAGVGCSGAAILKAIDDAVRDGVDIISISIGIGSPLFQSDYLNDPIAIGAFHAQLMGVLVVCSGGNDGPDPNTVGNVAPWIFTVAASNIDRDFQSSVVLGNGKTFHGTAINLSNLTSSKTYPLVFGKDAAAKFTPVSEARNCYPGSLDRSKVAGKIVVCASDDFSTSRTIKELVVQDAKAMGLILINEASKTVPMDSNIFPFTQIGNSDGLQILEYINSTKNPTATILRTVEVQRLKPAPIVAYFSSRGPSPLTENILKPDITAPGVSILAAMIPKSDGDSGPIGKKPSNYAMRSGTSMACPHVAGAAAFIKSVYHDWSSSMIKSALMTTATQYDNQRKFMRNSTNNPSNPHEMGAGEISPIKALNPGLVFETTNEDYLRFLCYYGYSNKVIRSVSKQNFSCPKTSKEDLISNVNYPSISIGKLDSKQAAKVIERTVTNVGAPDATYIAKVHSSEGLIVKVNPRKIVFSEKVKKVTFKVSFYGKEARSGYNFGTITWRDTAHSVRTFFAVNVI 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22159748 22173196 + ClG42_08g0122600.10 Clacu08g1226 255568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1226 918 SUPERFAMILY Thioredoxin-like 78 171 IPR036249 -
Clacu08g1226 918 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 185 254 IPR037045 -
Clacu08g1226 918 PRINTS Subtilisin serine protease family (S8) signature 360 373 IPR015500 -
Clacu08g1226 918 PRINTS Subtilisin serine protease family (S8) signature 283 302 IPR015500 -
Clacu08g1226 918 PRINTS Subtilisin serine protease family (S8) signature 700 716 IPR015500 -
Clacu08g1226 918 Gene3D Peptidase S8/S53 domain 285 783 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu08g1226 918 ProSiteProfiles Thioredoxin domain profile. 45 198 IPR013766 -
Clacu08g1226 918 FunFam subtilisin-like protease SBT1.5 495 638 - -
Clacu08g1226 918 FunFam Thioredoxin-like protein CITRX, chloroplastic 73 180 - -
Clacu08g1226 918 SUPERFAMILY Subtilisin-like 280 774 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Clacu08g1226 918 Pfam Thioredoxin 80 173 IPR013766 -
Clacu08g1226 918 CDD Peptidases_S8_3 251 737 IPR034197 -
Clacu08g1226 918 Pfam Fibronectin type-III domain 818 915 IPR041469 -
Clacu08g1226 918 Gene3D - 495 639 - -
Clacu08g1226 918 ProSitePatterns Serine proteases, subtilase family, serine active site. 701 711 IPR023828 -
Clacu08g1226 918 Pfam PA domain 525 618 IPR003137 -
Clacu08g1226 918 Pfam Peptidase inhibitor I9 203 254 IPR010259 -
Clacu08g1226 918 Gene3D - 787 917 - -
Clacu08g1226 918 CDD PA_subtilisin_like 501 632 - -
Clacu08g1226 918 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 206 910 IPR045051 -
Clacu08g1226 918 CDD TRX_family 85 174 - -
Clacu08g1226 918 Gene3D Glutaredoxin 72 179 - -
Clacu08g1226 918 ProSiteProfiles Serine proteases, subtilase domain profile. 258 770 - -
Clacu08g1226 918 Pfam Subtilase family 284 747 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Clacu08g1226 918 FunFam Subtilisin-like protease SBT1.5 285 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g1711 Clacu-Chr5:25924186 Clacu08g1226 Clacu-Chr8:22159748 1.90E-172 dispersed
Clacu08g1226 Clacu-Chr8:22159748 Clacu10g0386 Clacu-Chr10:4872166 1.90E-150 dispersed
Clacu08g1226 Clacu-Chr8:22159748 Clacu09g0110 Clacu-Chr9:1017185 1.70E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1226 K25898 - csv:101220772 1325.07