Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1228 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCCCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA 534 58.99 MSSAHSPSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22179692 22180225 + ClG42_08g0122800.10 Clacu08g1228 255570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1228 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 159 IPR013083 -
Clacu08g1228 177 PANTHER RING-H2 FINGER PROTEIN ATL67 13 176 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Clacu08g1228 177 Pfam Ring finger domain 112 154 IPR001841 -
Clacu08g1228 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Clacu08g1228 177 SMART ring_2 112 153 IPR001841 -
Clacu08g1228 177 CDD RING-H2_EL5-like 112 154 - -
Clacu08g1228 177 SUPERFAMILY RING/U-box 111 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu05g0144 Clacu-Chr5:1380426 Clacu08g1228 Clacu-Chr8:22179692 2.00E-24 dispersed
Clacu05g1044 Clacu-Chr5:9262110 Clacu08g1228 Clacu-Chr8:22179692 1.20E-23 dispersed
Clacu07g1515 Clacu-Chr7:29760181 Clacu08g1228 Clacu-Chr8:22179692 1.30E-23 dispersed
Clacu08g1228 Clacu-Chr8:22179692 Clacu10g1799 Clacu-Chr10:31602422 2.30E-25 dispersed
Clacu08g1228 Clacu-Chr8:22179692 Clacu05g0094 Clacu-Chr5:1056048 3.90E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1228 - - - 0.0