Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1238 ATGGATGCGAACGGACAGCAAAAAGCTCAAGAGGCCCTAGATGCTGAAATCAAATCATTTTTTGATTCAGCTCCCCCTTTGAGGAATATTGAGGATATCAGCAAAGATTTGAGAAATTTTGTTGAAATGAATTCACCACAAGCTGGAACTGAAAGTGCCAGGAAAGTTGTTTGTGTGACATCTGGGGGCACCACTGTTCCTTTAGAGCAAAGATGTGTTCGGTATATAGACAACTTCAGCTCAGGTCACCGAGGTGCAGCATCCACAGAGTACTTTCTGAAGGCTGGATATTCAGTTATCTTCTTATATCGAAAGGGAACCTGCCAACCATATTGCAGTTTGCTTCCTGAGGATCCATTTCTGGAGTGTTTTGAGTTCACCCAGGAGTCGGGCATACAAGTACCCCAGCCTTATTCGGAAGCAGTTAAGAAGGCAATCAGTGAGCATCATGCTGCAATAGCAGATGGCAGACTTCTTAAACTTCCTTTTACAACGATTTTTGAGTATCTTCAGATGTTGCACATGGTTGCAATATCATTGAGGAGTATTGGACCCCATGCACTCTTTTATCTTGCTGCAGCTGTCTCTGACTTTTACGTGCCATGGGAGAGCATGGCAGAGCACAAGATTCAGTCAGGATCAGGGCCTTTAGACATGCGACTTGTTCAGGTGCCAAAGATGCTATCAGGGCTGAGGAGTGAGTGGGCTCCGACGGCGTACTGTATATCCTTCAAGCTAGAGACTGATGTAAAAATCCTCTTGGAGAAGGCAAATGCAGCTCTGAAAAAGTACAAGATGCATATGGTCATTGCAAATGAACTTTTGACCCGAAAGGAGGAGGTGACTCTTGTAACTGGAAATGAAAAGATTCATGTTCGGCGTGACCCGAAACTGGTTGGCGACGAAGTGGAGAAACATATCGTCAAACATATTGTCGAGAAGCATTCCGCTTATGTGGACAATTCCGACCACAAAGTATCAAGGGCCAGTGGATCATAG 999 44.74 MDANGQQKAQEALDAEIKSFFDSAPPLRNIEDISKDLRNFVEMNSPQAGTESARKVVCVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEYFLKAGYSVIFLYRKGTCQPYCSLLPEDPFLECFEFTQESGIQVPQPYSEAVKKAISEHHAAIADGRLLKLPFTTIFEYLQMLHMVAISLRSIGPHALFYLAAAVSDFYVPWESMAEHKIQSGSGPLDMRLVQVPKMLSGLRSEWAPTAYCISFKLETDVKILLEKANAALKKYKMHMVIANELLTRKEEVTLVTGNEKIHVRRDPKLVGDEVEKHIVKHIVEKHSAYVDNSDHKVSRASGS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22352774 22356672 - ClG42_08g0123800.10 Clacu08g1238 255580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1238 332 PANTHER CORNICHON-RELATED 72 316 - GO:0004632(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0015937(PANTHER)
Clacu08g1238 332 Gene3D - 35 323 IPR035929 -
Clacu08g1238 332 FunFam Phosphopantothenate--cysteine ligase 2 33 323 - -
Clacu08g1238 332 SUPERFAMILY CoaB-like 50 318 IPR035929 -
Clacu08g1238 332 Pfam DNA / pantothenate metabolism flavoprotein 172 278 IPR007085 -
Clacu08g1238 332 Pfam DNA / pantothenate metabolism flavoprotein 54 105 IPR007085 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1238 K01922 - - csv:101214416 607.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0422 Clacu-Chr8:5840311 Clacu08g1238 Clacu-Chr8:22352774 1.80E-56 dispersed
Clacu08g0423 Clacu-Chr8:5844624 Clacu08g1238 Clacu-Chr8:22352774 1.60E-184 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g344 . . . . . . . . . Cmo12g00109 . . . . . . Cpe07g00115 Bhi04g00720 . . . . . . Cla08g01082 Cam08g1533 Cec08g1109 Cco08g1236 Clacu08g1238 . Cre08g1019 . . . . . . . Cme03g01492 . . . Bda01g01398 . . . . . . . Cma12g00135 . . . . . . . . . . . . . . . . . . . Lsi08g00938 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004404 1 4 1 1 1 3 1 3 1 1 3 3 1 1 1 1 3 2 1 1 1 1 0 1 1 1 1 1 1 1 43