Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1242 ATGGCAGCTTTTGCTCTCTCAAATTACACTCTCTTTTCTCCTCGCCCTTCTACTCCACACGTTTCTTCTTCCTCTAAAACCCTAGAATGCACATCCCTTATTCACCAACCAGTTTGTCTTCTTCATAATCCTCGCCATCGCTATCGTCTTTGTAACTCATTAATAAGTTTTTCTCCAGTTACTCGTTCTGTTGCATCCTGTTTTTCTGCTCCTGATTCTGTCGCCAATGTAAATAAAGAAGAGGATGAGGGAAAAGCTATGGAAAAGGATGGATATCAGTTTGATGGATCTAGCTTGCAGACCCTCATCGAGGTATACCGAGAAGCTTTTCTCGATGGAGATCAGAAGACTGTTTCTGAAGTCGAGGAAAGACTAAAAATAATTGGGAGGGAGAAAGATGGGTTGTCCCAGAAAGTGTCAAATATATCGGCGGAGATAACGTCTGGAAAAGAGAAATATATACGCTTACAAGCTGATTTTGATAATTTTAGGAAAAGATCAGAAAAAGAAAGACATACTGTGAAGAATAATGCTCAAAAGGAGGTTATTGAGAGCCTATTGCCAATGATTGACAGTTTTGAGAAAGCCAGGCAAAAAATTGTTCCTCAAACTGACAAGGAGAAGAAGATTGACGTAAGCTACCAGGGTATATACAAGCAATTTGTCGAGACGTTGAGGAGCTGGCGTGTCTCAGCCGTTGCCACAGTAGGAAGGCCATTTGATCCCTCATTACATGAAGCTGTAGCACGAGAGGAGTCACCGGAGATCAAGGAAGGGATCGTTATTCAAGAATTACGACGGGGGTTTATGCTTGGTGAACGGGTTCTAAGACCAGCAAGAGTAAAAGTTTCAAAAGGTCCAGGTAGGAAGAATTCCCCGACAATCGATGCAGGGCAACAACCAGCAGCTGCTGTGGAGTAG 921 42.78 MAAFALSNYTLFSPRPSTPHVSSSSKTLECTSLIHQPVCLLHNPRHRYRLCNSLISFSPVTRSVASCFSAPDSVANVNKEEDEGKAMEKDGYQFDGSSLQTLIEVYREAFLDGDQKTVSEVEERLKIIGREKDGLSQKVSNISAEITSGKEKYIRLQADFDNFRKRSEKERHTVKNNAQKEVIESLLPMIDSFEKARQKIVPQTDKEKKIDVSYQGIYKQFVETLRSWRVSAVATVGRPFDPSLHEAVAREESPEIKEGIVIQELRRGFMLGERVLRPARVKVSKGPGRKNSPTIDAGQQPAAAVE 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22396046 22397731 - ClG42_08g0124200.10 Clacu08g1242 255584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1242 306 CDD GrpE 150 283 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 Gene3D Head domain of nucleotide exchange factor GrpE 230 285 IPR009012 GO:0006457(InterPro)
Clacu08g1242 306 PANTHER GRPE PROTEIN 92 285 IPR000740 GO:0000774(PANTHER)|GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0009507(PANTHER)|GO:0042803(InterPro)|GO:0051082(PANTHER)|GO:0051087(InterPro)
Clacu08g1242 306 Pfam GrpE 131 285 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 232 287 IPR009012 GO:0006457(InterPro)
Clacu08g1242 306 FunFam Protein GrpE 229 284 - -
Clacu08g1242 306 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 134 227 IPR013805 -
Clacu08g1242 306 Gene3D - 113 226 IPR013805 -
Clacu08g1242 306 Hamap Protein GrpE [grpE]. 78 285 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 ProSitePatterns grpE protein signature. 240 283 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 MobiDBLite consensus disorder prediction 281 306 - -
Clacu08g1242 306 PRINTS GrpE protein signature 154 170 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 PRINTS GrpE protein signature 237 252 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 PRINTS GrpE protein signature 182 197 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
Clacu08g1242 306 PRINTS GrpE protein signature 264 283 IPR000740 GO:0000774(InterPro)|GO:0006457(InterPro)|GO:0042803(InterPro)|GO:0051087(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1242 K03687 - - csv:101215875 501.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu04g0655 Clacu-Chr4:20372461 Clacu08g1242 Clacu-Chr8:22396046 3.20E-47 dispersed
Clacu08g1242 Clacu-Chr8:22396046 Clacu10g0487 Clacu-Chr10:5925432 1.10E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g338 . . . . . . . . . . . . . Car12g00130 Sed04g0119 . Cpe07g00118 Bhi04g00711 Tan02g2357 Cmetu03g1212 . Hepe10g0529 . . Cla08g01087 Cam08g1539 Cec08g1113 Cco08g1240 Clacu08g1242 . Cre08g1023 . . . . . Csa04g01882 . Cme03g01499 . . . . . . . Bma02g00258 . . . Cma12g00139 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012843 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 0 1 2 0 1 1 1 1 1 1 0 1 1 1 1 28