Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1243 ATGATGGACCCGAATCTTTGGCGTGCTTTTGCCGGCAATTCTGCCCATATCCACACTGTCGGTTCTGAGGTTTACTATTTCGTTCAAGGACATGTCGAACAAGCTACTTACGTTCCGACACTTTCTCGGTCTGTTATTGCTAACCCTACTACTAAATGTATCATTACTTCTGCTGATTATAGTGCCGATTCTCTTTCTGATGAGGTCTGCCTTAAGTTGAATCTTAATCCAATTCGTCCTGGTGAGAGTGGGTCTGAACTGGTTTCTGGATTTGGTTGTTCTGATGAAGGTAGTGGGAAGAGGAATAGAATTGAGAAGTTTGCTAAGATTCTTACGTCTTCTGATGCTAATAATGGCGGTGGATTTTCTGTGCCGCGGTACTGTGCGGATTCTATTTTTCCTCCGTTGAATTATCAGGTTGAACCGCCGGTGCAGACTTTGTCGATTACTGATGTTCATGGAGTTGTTTGGAATTTTCGTCACATTTACCGTGGGACGCCGAGGCGGCATTTGCTTACTACTGGGTGGAGTAAATTTGTGAATCATAAGAAGCTGGTTGCGGGTGATGCCGTCATTTTCGCTAGGAATTCCAGTGGGGATATGTTTGTTGGCATTCGTCGCGTCACAAGCACAAGGGCTATTATAGGCGGTGATTGCAGCAGATGGAATATCCAGATTGGTGGTGGAGGAGGAAGGTGCAATGTGGAGGAGAAACGTTCTGGAGATGGAGGAAATGATAATTTCTCCCGGAGTAATATTGGGAAGGTGCCGGCTGAGGCGGTTGCTAACGCTGCGGAATTGTCCGCCCAATTTAAGCCGTTTGAGGTGGTTTATTATCCCAGGGCTGGTTTGTCCGAATTTGTTGTTCCTGCTGAGAAAGTGAACAATTCGATGAATTATCAGTGGTATTCTGGAATAAGAGTGAAAATGCCTTTGGAGACGGAGGATTCTTTGAAGACGCAATGGTATCAAGGGACTGTAACCTCAGCGTCTGTTCCTGCCCATGGGCCTTGGAAGGGTTCTCCATGGCGTATGCTTGAGGTTACATGGGAAGAAACTGATGCTCTGCAGAGTGCTAAGTATGTGAGCCCTTGGGAAGTTGAACTTGCTACACCCACTCCTCCAATACCCTCTCCTCTCCACCCAGCAAAGAAATTTAGAGGTCCCCAGAAATCTGGGATGGTGAATGGTGAAGCAGATCTGTTTTCACCTATGATGAGATTCGGTGATTCAACAATGGGGCAATTCAACCCATCATTTTTGAGTTTTAACTCTTTTCCTGCTGGCATGCAGGGAGCCAGGCAAAATATTTTCTGTGAATCGGGTTTATTCAATCCATATAATGAAATTACTCCACCATCGTGTGATGAAAATTCCATGTGCAAACTGAATCCAGCGCCAATGACACAAACGGTGTCTACTGACCTCCAAATTGGTAGTGCGCAATCGGATACCTTATCGCCTGATAGTCAGGCTAGTGTTCTTTCCTTTGCCACAGGAACGGCTGAGAACCATACCTGCAACTCAACTAAAGCTGGAGTCAATTCATTTCAATTGTTTGGTCAAGTTATATATACGAATCTGCCGGTTGAAAATGGACGTGACAGTTGTGCTAACAATGATGGTGGTGACAATAAGCAAGCAGCTGTACAGGTACTTGAGCTAGGCAGGAAGCTGACTACAGTATAA 1689 45.35 MMDPNLWRAFAGNSAHIHTVGSEVYYFVQGHVEQATYVPTLSRSVIANPTTKCIITSADYSADSLSDEVCLKLNLNPIRPGESGSELVSGFGCSDEGSGKRNRIEKFAKILTSSDANNGGGFSVPRYCADSIFPPLNYQVEPPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFARNSSGDMFVGIRRVTSTRAIIGGDCSRWNIQIGGGGGRCNVEEKRSGDGGNDNFSRSNIGKVPAEAVANAAELSAQFKPFEVVYYPRAGLSEFVVPAEKVNNSMNYQWYSGIRVKMPLETEDSLKTQWYQGTVTSASVPAHGPWKGSPWRMLEVTWEETDALQSAKYVSPWEVELATPTPPIPSPLHPAKKFRGPQKSGMVNGEADLFSPMMRFGDSTMGQFNPSFLSFNSFPAGMQGARQNIFCESGLFNPYNEITPPSCDENSMCKLNPAPMTQTVSTDLQIGSAQSDTLSPDSQASVLSFATGTAENHTCNSTKAGVNSFQLFGQVIYTNLPVENGRDSCANNDGGDNKQAAVQVLELGRKLTTV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22402708 22406198 - ClG42_08g0124300.10 Clacu08g1243 255585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1243 562 Gene3D - 302 373 - -
Clacu08g1243 562 MobiDBLite consensus disorder prediction 373 392 - -
Clacu08g1243 562 SUPERFAMILY DNA-binding pseudobarrel domain 102 209 IPR015300 -
Clacu08g1243 562 CDD B3_DNA 107 207 IPR003340 GO:0003677(InterPro)
Clacu08g1243 562 Pfam Auxin response factor 264 346 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Clacu08g1243 562 Pfam B3 DNA binding domain 107 208 IPR003340 GO:0003677(InterPro)
Clacu08g1243 562 Gene3D - 104 208 IPR015300 -
Clacu08g1243 562 FunFam Auxin response factor 105 209 - -
Clacu08g1243 562 ProSiteProfiles B3 DNA-binding domain profile. 107 209 IPR003340 GO:0003677(InterPro)
Clacu08g1243 562 SMART B3_2 107 209 IPR003340 GO:0003677(InterPro)
Clacu08g1243 562 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 532 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1243 K14486 - - csv:101216118 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g0903 Clacu-Chr8:19108621 Clacu08g1243 Clacu-Chr8:22402708 3.00E-92 dispersed
Clacu08g1243 Clacu-Chr8:22402708 Clacu11g0281 Clacu-Chr11:2590416 2.60E-62 dispersed
Clacu08g1243 Clacu-Chr8:22402708 Clacu04g0954 Clacu-Chr4:23760534 1.10E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g925 Blo04g00025 . Bda14g00023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g01376 Bma03g00029 . . . . . . . . . . . . . . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . .
Vvi18g337 . . . . . . . . . . . . . . Sed04g0120 . . Bhi04g00710 Tan02g2359 Cmetu03g1655 . . . . Cla08g01088 Cam08g1540 Cec08g1114 Cco08g1241 Clacu08g1243 . Cre08g1024 . . . . . . . Cme03g01500 Blo17g00126 Blo18g00139 . . . . Bma01g01425 . . . . Cma12g00140 . . . . . . . . . . . . . . . . . . . Lsi08g00944 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006011 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48181 PF02362 B3 3.20E-20 CL0405 Clacu TF