Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1252 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCGTCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAACCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCATTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCGGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCCTGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATTGATTGGGCTTCGATTTTAACATCTTGA 1101 50.05 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSSSFPDFSFSSSVQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22508657 22509757 + ClG42_08g0125200.10 Clacu08g1252 255594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1252 366 CDD AP2 163 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 MobiDBLite consensus disorder prediction 271 289 - -
Clacu08g1252 366 Pfam AP2 domain 164 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 Gene3D AP2/ERF domain 164 222 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 FunFam Ethylene-responsive transcription factor 2 163 222 - -
Clacu08g1252 366 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 363 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Clacu08g1252 366 SMART rav1_2 164 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu08g1252 366 MobiDBLite consensus disorder prediction 257 348 - -
Clacu08g1252 366 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677(InterPro)
Clacu08g1252 366 MobiDBLite consensus disorder prediction 305 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0192 Clacu-Chr1:1916344 Clacu08g1252 Clacu-Chr8:22508657 2.30E-28 dispersed
Clacu02g0120 Clacu-Chr2:1286102 Clacu08g1252 Clacu-Chr8:22508657 1.10E-27 dispersed
Clacu06g0810 Clacu-Chr6:9798998 Clacu08g1252 Clacu-Chr8:22508657 6.40E-29 dispersed
Clacu07g1510 Clacu-Chr7:29681315 Clacu08g1252 Clacu-Chr8:22508657 1.40E-33 dispersed
Clacu08g1252 Clacu-Chr8:22508657 Clacu11g1719 Clacu-Chr11:28458610 4.60E-92 dispersed
Clacu01g1959 Clacu-Chr1:31628371 Clacu08g1252 Clacu-Chr8:22508657 4.70E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48182 PF00847 AP2 4.90E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1252 K09286 - csv:101222833 576.244