Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1267 ATGGAGAAGGAGAGAGAGCACCTTGTTTACTTGGCTAGACTTGCAGAACAAGCTGAGAGATATGATGAAATGGTGGAAATGATGAAGAGCGTTGCAAAGTTGGATGTAGAACTTACCGTGGAGGAGAGGAACCTGGTCTCTGTGGGATATAAGAATGTTATTGGGGCAAGAAGAGCCTCATGGCGTATTTTATCTTCTATTGAACAAAAGGAGGAAGGAAAGAAGAACGAGGTTAATGTGAAGAGGGTAAAGGAGTACAGGCAGAGGGTTGAAGACGAACTGGCGAGAATTTGCCAGGACATCTTAACTGTTGTTGACAAGCATCTCATTCCATCTTCATCCTCTGGAGAATCCAATGTTTTTTACTATAAGATGAAGGGGGATTATAACCGATACTTAGCGGAGTTTAAATCTGGCCGTGAACGTGAAGAAGCTGCAGACCAGTCGATGAAGGCCTATGAGTCTGCCTCAAGCATTGCAAGCTCTGATCTGCCTCCAACACACCCCATCAGACTTGGCTTGGCGCTTAACTTTTCTGTTTTCTACTATGAGATATTAAATTCCCCAGAGAGGGCGTGCCACCTTGCTAAACAAGCTTTTGATGATGCCATAGCTGAACTCGACGGCCTCAATGAAGAATCCTACAAGGACAGTACCCTCATTATGCAGCTGCTGAGGGATAATCTAACGTTATGGACCTCAGATCTCCCAGATGAGGGAGGTGAGCAATCTAAAGCTGCTGATGAACCTTGA 753 45.02 MEKEREHLVYLARLAEQAERYDEMVEMMKSVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEGKKNEVNVKRVKEYRQRVEDELARICQDILTVVDKHLIPSSSSGESNVFYYKMKGDYNRYLAEFKSGREREEAADQSMKAYESASSIASSDLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDDAIAELDGLNEESYKDSTLIMQLLRDNLTLWTSDLPDEGGEQSKAADEP 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22633043 22635342 - ClG42_08g0126700.10 Clacu08g1267 255609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1267 250 Gene3D - 1 246 IPR036815 -
Clacu08g1267 250 ProSitePatterns 14-3-3 proteins signature 2. 215 234 IPR023409 -
Clacu08g1267 250 SUPERFAMILY 14-3-3 protein 4 235 IPR036815 -
Clacu08g1267 250 PIRSF 14-3-3 1 247 IPR000308 -
Clacu08g1267 250 PANTHER 14-3-3 PROTEIN 4 238 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu08g1267 250 ProSitePatterns 14-3-3 proteins signature 1. 43 53 IPR023409 -
Clacu08g1267 250 PRINTS 14-3-3 protein zeta signature 179 205 IPR000308 -
Clacu08g1267 250 PRINTS 14-3-3 protein zeta signature 206 235 IPR000308 -
Clacu08g1267 250 PRINTS 14-3-3 protein zeta signature 86 110 IPR000308 -
Clacu08g1267 250 PRINTS 14-3-3 protein zeta signature 37 66 IPR000308 -
Clacu08g1267 250 PRINTS 14-3-3 protein zeta signature 117 139 IPR000308 -
Clacu08g1267 250 PRINTS 14-3-3 protein zeta signature 152 178 IPR000308 -
Clacu08g1267 250 Pfam 14-3-3 protein 11 233 IPR023410 -
Clacu08g1267 250 FunFam 14-3-3 protein epsilon 1 246 - -
Clacu08g1267 250 SMART 1433_4 5 246 IPR023410 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1267 Clacu-Chr8:22633043 Clacu08g1281 Clacu-Chr8:22750550 4.50E-91 dispersed
Clacu05g2574 Clacu-Chr5:33656379 Clacu08g1267 Clacu-Chr8:22633043 1.50E-108 transposed
Clacu07g0270 Clacu-Chr7:3060643 Clacu08g1267 Clacu-Chr8:22633043 5.40E-111 transposed
Clacu08g1197 Clacu-Chr8:21916373 Clacu08g1267 Clacu-Chr8:22633043 2.40E-106 transposed
Clacu11g1597 Clacu-Chr11:27133711 Clacu08g1267 Clacu-Chr8:22633043 1.50E-110 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1267 K06630 - csv:101222677 464.922