Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1277 ATGGCTCTTTCCAGCAGTTCCCTCATTCCCACCAAATCTTTTGTTGGGTCTCAGAGCCTTCTTCCTTCCTCTAAGCCTCACCATTGTTCTCTCTACTCCAACGATCAAAAGCCCCTGCGGATTGTCGCTCAAGCTTCTGAGTCTGCGAACAAACCTGTGGTTTCTGATCCACCGGTGGAGAAGAAGTCGGTGGCATCGTCTGTGACGAACTCGACGGTGAAGACGGCTCAGAATTTGGGTTCTGAGAAATGGACTCCCGACAGTTGGAAGTCGAAGAAAGCTCATCAACTTCCCGAGTATCCGAATCAGGAGGAGCTCCAATCGGTGCTTCATACGCTGGAAGCATTTCCACCACTCGTCTTCGCTGGAGAGGCGAGGAGCTTGGAGGAGCGTTTAGCAGAGGCGGCCATGGGGAATGCTTTCCTTCTACAAGGTGGGGATTGTGCTGAGAGCTTTAAGGAATTTAACGGCAATAACATTCGTGATACATTTAGGGTTCTTCTTCAAATGGGTGCTGTTCTAATGTTTGGAGGACAAATGCCAGTCATTAAGGTTGGTAGAATGGCCGGCCAGTTCGCGAAGCCGAGGTCAGACTCGTTCGAAGAGAAGGACGGTGTAAAGCTACCAAGTTACAGGGGCGATAATATCAATGGGGATGCGTTTGATGAGAAGTCGAGGATTCCAGATCCTCAACGGTTGATTCGGGCTTACTGTCAATCTGCAGCAACTTTAAATCTTTTAAGGGCTTTTGCCACTGGTGGTTATGCAGCCATGCAGAGGGTCACACAGTGGAACTTGGATTTTGCAGAGCATAGCGAGCAAGGAGATAGATACCAAGAACTCGCCCACCGAGTCGATGAGGCCCTTGGATTCATGGCTGCCGCTGGACTTACTATTGATCATCCTATCATGACTGCAACCGATTTCTGGACATCTCATGAATGCTTACTCTTGCCTTATGAGCAGTCACTCACGCGGCTGGATTCAACTTCTGGTCTTTACTATGATTGCTCTGCTCATATGCTTTGGGTGGGTGAACGAACCAGGCAGTTGGATGGTGCACATGTTGAATTCTTAAGAGGGGTTGCCAATCCCCTAGGGATTAAAGTAAGTGATAAGATGAATCCAAGCGAGCTAGTTAAGATCATTGAGATTTTAAATCCTCAAAACAAGCCAGGGAGGATTACAGTGATCACCAGAATGGGAGCTGAGAATATGAGAGTGAAGCTTCCTCATCTAATCAGAGCTGTTCGCAGGTCAGGGCAAATTGTCACATGGGTCTCCGATCCTATGCATGGGAACACTATCAAAGCCCCCTGTGGTCTCAAGACCCGCCCCTTCGACTCTATCAGGGCTGAGGTGAGAGCATTTTTTGATGTGCACGAGCAAGAGGGAAGCCACGCTGGGGGAGTTCATTTGGAGATGACTGGGCAGAATGTGACCGAATGTATTGGTGGGTCGAGAACTGTAACCTTCGATGACTTGAGCTCGCGCTACCACACCCACTGTGATCCTAGGCTCAATGCTTCACAATCCCTCGAGCTAGCTTTTATCATCGCCGAGCGATTCAGAAAGAGGAGGATCAAGTTGCAGACATCTCTTCCCTCTTCTGGCCTGTAA 1620 49.07 MALSSSSLIPTKSFVGSQSLLPSSKPHHCSLYSNDQKPLRIVAQASESANKPVVSDPPVEKKSVASSVTNSTVKTAQNLGSEKWTPDSWKSKKAHQLPEYPNQEELQSVLHTLEAFPPLVFAGEARSLEERLAEAAMGNAFLLQGGDCAESFKEFNGNNIRDTFRVLLQMGAVLMFGGQMPVIKVGRMAGQFAKPRSDSFEEKDGVKLPSYRGDNINGDAFDEKSRIPDPQRLIRAYCQSAATLNLLRAFATGGYAAMQRVTQWNLDFAEHSEQGDRYQELAHRVDEALGFMAAAGLTIDHPIMTATDFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMNPSELVKIIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRSGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHAGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERFRKRRIKLQTSLPSSGL 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22710810 22713939 + ClG42_08g0127700.10 Clacu08g1277 255619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1277 539 SUPERFAMILY Aldolase 74 524 - -
Clacu08g1277 539 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 273 525 - -
Clacu08g1277 539 MobiDBLite consensus disorder prediction 42 70 - -
Clacu08g1277 539 Pfam Class-II DAHP synthetase family 84 520 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Clacu08g1277 539 Gene3D Aldolase class I 271 525 IPR013785 -
Clacu08g1277 539 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 67 531 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Clacu08g1277 539 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 84 527 IPR002480 GO:0003849(InterPro)|GO:0009073(InterPro)
Clacu08g1277 539 MobiDBLite consensus disorder prediction 78 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1277 K01626 - - csv:101220636 1047.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu09g1641 Clacu-Chr9:28914566 Clacu08g1277 Clacu-Chr8:22710810 2.50E-234 transposed
Clacu10g0481 Clacu-Chr10:5891201 Clacu08g1277 Clacu-Chr8:22710810 4.90E-228 transposed
Clacu01g1933 Clacu-Chr1:31423338 Clacu08g1277 Clacu-Chr8:22710810 3.50E-242 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g436 . Blo12g00710 . Bda03g00487 Bpe02g00116 Bpe04g00441 . Bma01g02607 . Cmo12g00127 . . . Car12g00152 Sed14g1024 . Cpe07g00140 Bhi04g00773 Tan02g2405 Cmetu03g1046 . Hepe10g0485 . Lcy13g1551 Cla08g01120 Cam08g1576 Cec08g1146 Cco08g1273 Clacu08g1277 . Cre08g1058 Cone4ag1327 Cone7ag1268 . . . . . Cme03g01855 . . Bda11g00773 . . . . . . . . Cma12g00165 . . . . . . . . . . . . . . . . . . . Lsi08g00976 Csa02g02160 Chy03g01357 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000443 4 4 4 4 4 4 5 4 4 4 4 3 5 4 3 4 4 5 5 4 4 3 4 4 3 4 3 5 4 1 117