Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1281 ATGGCTGCCGCCCCTTCTGTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCCCTCGACAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCCTACAAGAACGTCATCGGCGCTCGCAGGGCTTCCTGGCGTATCATTTCCTCCATCGAACAAAAGGAGGAGAGCCGAGGCAACGACGACCATGTCTCTGTGATCCGTGACTATAGATCCAAAATTGAGACCGAACTCTCCAATATTTGCGATGGAATCCTCAAGCTTCTCGATTCCAGACTCATTCCCTCCGCCGCTTCCGGAGATTCCAAGGTTTTTTACCTCAAAATGAAGGGAGATTACCATAGATACCTCGCCGAATTCAAAACCGGAGCCGAACGCAAGGAAGCTGCTGAAAGCACTCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCTGAGTTGCCTCCTACACATCCGATCCGACTTGGATTGGCCCTTAACTTCTCTGTATTCTACTATGAAATTTTGAATTCACCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATCGCTGAATTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTGATCATGCAGCTTCTTCGCGATAATCTCACTCTCTGGACATCGGACATGCAGGATGATGGTGCTGATGAGATTAAAGAAGCTCCCCCCAAGCGTGAGGATGAAAAGCAGTGA 786 50.0 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22750550 22752195 + ClG42_08g0128100.10 Clacu08g1281 255623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1281 261 FunFam 14-3-3 protein epsilon 4 251 - -
Clacu08g1281 261 Gene3D - 2 251 IPR036815 -
Clacu08g1281 261 MobiDBLite consensus disorder prediction 243 261 - -
Clacu08g1281 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Clacu08g1281 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Clacu08g1281 261 Coils Coil 14 41 - -
Clacu08g1281 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Clacu08g1281 261 SMART 1433_4 8 251 IPR023410 -
Clacu08g1281 261 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Clacu08g1281 261 MobiDBLite consensus disorder prediction 242 261 - -
Clacu08g1281 261 PIRSF 14-3-3 2 250 IPR000308 -
Clacu08g1281 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Clacu08g1281 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Clacu08g1281 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Clacu08g1281 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Clacu08g1281 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Clacu08g1281 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Clacu08g1281 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1267 Clacu-Chr8:22633043 Clacu08g1281 Clacu-Chr8:22750550 4.50E-91 dispersed
Clacu08g1281 Clacu-Chr8:22750550 Clacu11g1631 Clacu-Chr11:27454631 7.80E-102 dispersed
Clacu07g1632 Clacu-Chr7:30890091 Clacu08g1281 Clacu-Chr8:22750550 1.40E-119 transposed
Clacu11g1607 Clacu-Chr11:27240050 Clacu08g1281 Clacu-Chr8:22750550 3.90E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1281 K06630 - csv:101220164 508.834