Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1283 ATGAACAACGGCTCCAAATCCCCATCGCCAACCCAAGGAAAACCAATCAGATGCCGAGCTGCGGTTTGCAGACGGCCGGGAGAGCCGCTTCTCATAGAGGAGATTGAAGTTGACCCTCCAAAAATTGGGGAAGTTCGGATCAAAATTCTTTGTACTTCCCTCTGTCATTCTGATGTTACCGTTTGGAATATGAGACAAGAAATTTTTTCATTCCCCATCATTTTTGGACACGAAGCTGTCGGAATTGTGGAAAGTGTGGGAGAAGAAGTGAAGGAAGTGAAAGAAGGGGAAATGGTGTTGCCTGTGTTTCAATCAAATTGCAAAGAATGCAGAGAGTGCAAGAGTTTGAAGAGCAACAAATGCAGTGTTTTTGGGGGCAAATTTGGGATAGGAATGCCAAGAGATGGCACAAGCAGATTTAGGGATGTGAGTGGACACCCATTGAACCATTTCTTATATGTTTCAAGCTTTTCGGAGTATACAGTTGTTGATGTCCATAACCTTGTTCCAATCAATCCGGAGCTTCCTATGGATAAGGCCACCTTGTTTGGCTGTGGGGTCCCCACTGGGATTGGAGCTGCGTGGAAGGTTGCTGACGTGGACGAGGGTTCCACCGTGGCTATCTTCGGCCTTGGTATTGTTGGACTCTCGGTAGCGGAAGGATCAAAACGCCGTAAAGCTTCAAAGATCATCGGCATTGATTTGAATCCTAAAAAATTTGAGATTGCAAAAAAGTTTGGGGTGACCGATTTTATCAATCCAGCTACTTGTGGAGATAAGCCAATTCATGAAGTTATTAAGGAACAAACTGCTGGGGGAGCAGACTACTGCTTTGAGTGCATTGGCTTGGCTTCCCTCATGGAAGAAGCTATCAAAAGCACTAGAGAGGGTTGGGGAAAGACGGTGATTTTGGGAGTAGAGAAAGATGGTGCGGCATTCAAAGTGAAGCCCTTTGATATAATAAATGGGATCACCATCACCGGCGCTCTTTTTGGAGGTCTTAAGCCAAAATCAGACGTTCCAATGCTTATCAACAAGTTTTTGGACAAACCCATTCCTTATTCCACTCGGCCCATAACAGCCCATTACCCAAACGAAGGATTGACGTGGCAAATTATAATTGGAGATCAACTTTCGCTCTTTCGCTTCGGCTGGAATCATCGGAACCACCGATCGCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAGCTGAGCAATATGCCTTGAAAGAAAATGAGAATGTGGATATACCAAAGTCCTCTGAAGTAAAAGAGGTGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGATGTTGAAACCAGTCCTGCTGCTGAAAATGACACTGGAGCTGCCGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCACTGATGAGCAACCTGAGATTAAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTACATTGAGTACCATAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCAGGTCCGCTGTAG 1779 45.87 MNNGSKSPSPTQGKPIRCRAAVCRRPGEPLLIEEIEVDPPKIGEVRIKILCTSLCHSDVTVWNMRQEIFSFPIIFGHEAVGIVESVGEEVKEVKEGEMVLPVFQSNCKECRECKSLKSNKCSVFGGKFGIGMPRDGTSRFRDVSGHPLNHFLYVSSFSEYTVVDVHNLVPINPELPMDKATLFGCGVPTGIGAAWKVADVDEGSTVAIFGLGIVGLSVAEGSKRRKASKIIGIDLNPKKFEIAKKFGVTDFINPATCGDKPIHEVIKEQTAGGADYCFECIGLASLMEEAIKSTREGWGKTVILGVEKDGAAFKVKPFDIINGITITGALFGGLKPKSDVPMLINKFLDKPIPYSTRPITAHYPNEGLTWQIIIGDQLSLFRFGWNHRNHRSLLLLPSMAEAQSEKTPSLAEQYALKENENVDIPKSSEVKEVENPENAAPAEVVVKNDEPPVEADADQGSDNSPAQENNGDAPAAAAVEDVETSPAAENDTGAADESSGAGEEENSGDQESTDEQPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECNKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22766272 22773772 + ClG42_08g0128300.10 Clacu08g1283 255625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1283 592 FunFam S-(hydroxymethyl)glutathione dehydrogenase 190 329 - -
Clacu08g1283 592 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 175 348 IPR036291 -
Clacu08g1283 592 MobiDBLite consensus disorder prediction 418 526 - -
Clacu08g1283 592 Pfam Cytochrome oxidase c subunit VIb 529 589 IPR048280 -
Clacu08g1283 592 PANTHER ALCOHOL DEHYDROGENASE 14 353 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Clacu08g1283 592 FunFam Cytochrome c oxidase subunit 6B1 513 592 - -
Clacu08g1283 592 SUPERFAMILY GroES-like 11 196 IPR011032 -
Clacu08g1283 592 Gene3D - 21 364 - -
Clacu08g1283 592 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Clacu08g1283 592 Pfam Alcohol dehydrogenase GroES-like domain 43 172 IPR013154 -
Clacu08g1283 592 CDD Cyt_c_Oxidase_VIb 517 591 - -
Clacu08g1283 592 Pfam Zinc-binding dehydrogenase 214 344 IPR013149 -
Clacu08g1283 592 SUPERFAMILY Cytochrome c oxidase subunit h 518 591 IPR036549 GO:0005739(InterPro)
Clacu08g1283 592 FunFam alcohol dehydrogenase 1-like isoform X1 26 189 - -
Clacu08g1283 592 Gene3D Cytochrome c oxidase, subunit VIb 514 592 IPR036549 GO:0005739(InterPro)
Clacu08g1283 592 Gene3D - 190 329 - -
Clacu08g1283 592 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 536 579 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1283 K00121 - - csv:101209737 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1120 Clacu-Chr8:21170193 Clacu08g1283 Clacu-Chr8:22766272 8.10E-112 dispersed
Clacu08g1121 Clacu-Chr8:21192187 Clacu08g1283 Clacu-Chr8:22766272 2.90E-112 dispersed
Clacu08g1283 Clacu-Chr8:22766272 Clacu09g0973 Clacu-Chr9:9185014 1.40E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g444 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01126 Cam08g1582 Cec08g1152 Cco08g1279 Clacu08g1283 . Cre08g1065 . . . . . . . Cme03g01849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00983 Csa02g02165 Chy03g01352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84