Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1290 ATGGCGGTTTCAATTAGCAGAAAACTTTTCCCTGTTGCCACTGGAACTACCCAACTCAAGACCAATTGTTCCAGCTGCCCTTACGACTGCCCTTTCGACTGCTACGGTATTCCAGATTTCTACTTCCCACCGCCGCCTCTGCCGCCGCCGCCTCGTCTCTCCGACCACCAAAAACAGCTTCCAGTTATGACCATCATCCTAATTCTGTTCGTCGCCTTTTTCTTCGCTTTTAGTTTCTACATCATCGTTGTAAAATGCCGATCTTGGCTCACTCGCTCCCGCAACCAAGGGGTAGAGGTGTTGCAATCGGACGTCGGAGAGGGAGAGTTTATGAACGAGAATCAAATCGATCATCCAATTTGGTTCATCACCACCGTTGGGCTTCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGGGCGAAGGTTTAATCGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACTCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTAACTGATTTAGGTCCTGCGAATCAAAACGAAGCTAATTTGAGTGTAAATGAAGAAACCCAGATGGAGAATGAAGAGATTAATGGCCAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGGGAAGTTGGGGATGTTCAGATTGAGGAGACAATTCCAAAAGAAGGGAATAATTTTGAATCTGATGATTCTAAAGTTGAAGGCAATGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAACAACATGA 888 44.37 MAVSISRKLFPVATGTTQLKTNCSSCPYDCPFDCYGIPDFYFPPPPLPPPPRLSDHQKQLPVMTIILILFVAFFFAFSFYIIVVKCRSWLTRSRNQGVEVLQSDVGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKGEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDLGPANQNEANLSVNEETQMENEEINGQVLVENEGVVSSGSSENRGDVVDEQREVGDVQIEETIPKEGNNFESDDSKVEGNESMRNNEMDSSSTT 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22821073 22821960 + ClG42_08g0129000.10 Clacu08g1290 255632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1290 295 SUPERFAMILY RING/U-box 146 206 - -
Clacu08g1290 295 Pfam Ring finger domain 152 195 IPR001841 -
Clacu08g1290 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 201 IPR013083 -
Clacu08g1290 295 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Clacu08g1290 295 PANTHER RING-H2 FINGER PROTEIN ATL16 44 285 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Clacu08g1290 295 MobiDBLite consensus disorder prediction 237 295 - -
Clacu08g1290 295 CDD RING-H2_EL5-like 152 195 - -
Clacu08g1290 295 SMART ring_2 153 194 IPR001841 -
Clacu08g1290 295 FunFam RING-H2 finger protein ATL54 128 201 - -
Clacu08g1290 295 MobiDBLite consensus disorder prediction 246 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g0153 Clacu-Chr3:1653067 Clacu08g1290 Clacu-Chr8:22821073 1.90E-13 dispersed
Clacu05g0339 Clacu-Chr5:2929841 Clacu08g1290 Clacu-Chr8:22821073 2.20E-33 dispersed
Clacu07g0445 Clacu-Chr7:5375510 Clacu08g1290 Clacu-Chr8:22821073 7.40E-13 dispersed
Clacu08g1290 Clacu-Chr8:22821073 Clacu09g1184 Clacu-Chr9:11610186 1.40E-35 dispersed
Clacu08g1290 Clacu-Chr8:22821073 Clacu08g1292 Clacu-Chr8:22859272 1.90E-16 proximal
Clacu01g1925 Clacu-Chr1:31323191 Clacu08g1290 Clacu-Chr8:22821073 6.20E-34 transposed
Clacu09g1665 Clacu-Chr9:29519855 Clacu08g1290 Clacu-Chr8:22821073 9.20E-37 transposed
Clacu01g1922 Clacu-Chr1:31305399 Clacu08g1290 Clacu-Chr8:22821073 7.90E-14 wgd
Clacu11g1624 Clacu-Chr11:27386321 Clacu08g1290 Clacu-Chr8:22821073 1.00E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29