Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1291 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACCCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAACACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA 936 45.09 MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22829926 22831274 - ClG42_08g0129100.10 Clacu08g1291 255633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1291 311 MobiDBLite consensus disorder prediction 75 96 - -
Clacu08g1291 311 Gene3D - 110 180 IPR036638 GO:0046983(InterPro)
Clacu08g1291 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983(InterPro)
Clacu08g1291 311 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Clacu08g1291 311 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Clacu08g1291 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Clacu08g1291 311 MobiDBLite consensus disorder prediction 63 113 - -
Clacu08g1291 311 PANTHER MAX DIMERIZATION, MAD 4 301 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu08g1291 Clacu-Chr8:22829926 Clacu02g0428 Clacu-Chr2:3855260 8.60E-07 dispersed
Clacu02g1638 Clacu-Chr2:29819617 Clacu08g1291 Clacu-Chr8:22829926 8.10E-61 transposed
Clacu03g1717 Clacu-Chr3:30958033 Clacu08g1291 Clacu-Chr8:22829926 2.70E-46 transposed
Clacu05g0002 Clacu-Chr5:240719 Clacu08g1291 Clacu-Chr8:22829926 9.30E-40 transposed
Clacu05g0377 Clacu-Chr5:3232928 Clacu08g1291 Clacu-Chr8:22829926 3.90E-38 transposed
Clacu05g0629 Clacu-Chr5:5216421 Clacu08g1291 Clacu-Chr8:22829926 1.90E-28 transposed
Clacu05g1029 Clacu-Chr5:9107520 Clacu08g1291 Clacu-Chr8:22829926 4.10E-19 transposed
Clacu09g1185 Clacu-Chr9:11613214 Clacu08g1291 Clacu-Chr8:22829926 3.80E-47 transposed
Clacu01g1873 Clacu-Chr1:30872087 Clacu08g1291 Clacu-Chr8:22829926 1.40E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48184 PF00010 HLH 4.30E-10 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1291 - - - 0.0