Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g1291 | ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACCCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAACACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA | 936 | 45.09 | MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22829926 | 22831274 | - | ClG42_08g0129100.10 | Clacu08g1291 | 255633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g1291 | 311 | MobiDBLite | consensus disorder prediction | 75 | 96 | - | - | |
Clacu08g1291 | 311 | Gene3D | - | 110 | 180 | IPR036638 | GO:0046983(InterPro) | |
Clacu08g1291 | 311 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 184 | IPR036638 | GO:0046983(InterPro) | |
Clacu08g1291 | 311 | SMART | finulus | 122 | 173 | IPR011598 | GO:0046983(InterPro) | |
Clacu08g1291 | 311 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 168 | IPR011598 | GO:0046983(InterPro) | |
Clacu08g1291 | 311 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 167 | IPR011598 | GO:0046983(InterPro) | |
Clacu08g1291 | 311 | MobiDBLite | consensus disorder prediction | 63 | 113 | - | - | |
Clacu08g1291 | 311 | PANTHER | MAX DIMERIZATION, MAD | 4 | 301 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu08g1291 | Clacu-Chr8:22829926 | Clacu02g0428 | Clacu-Chr2:3855260 | 8.60E-07 | dispersed | |
Clacu02g1638 | Clacu-Chr2:29819617 | Clacu08g1291 | Clacu-Chr8:22829926 | 8.10E-61 | transposed | |
Clacu03g1717 | Clacu-Chr3:30958033 | Clacu08g1291 | Clacu-Chr8:22829926 | 2.70E-46 | transposed | |
Clacu05g0002 | Clacu-Chr5:240719 | Clacu08g1291 | Clacu-Chr8:22829926 | 9.30E-40 | transposed | |
Clacu05g0377 | Clacu-Chr5:3232928 | Clacu08g1291 | Clacu-Chr8:22829926 | 3.90E-38 | transposed | |
Clacu05g0629 | Clacu-Chr5:5216421 | Clacu08g1291 | Clacu-Chr8:22829926 | 1.90E-28 | transposed | |
Clacu05g1029 | Clacu-Chr5:9107520 | Clacu08g1291 | Clacu-Chr8:22829926 | 4.10E-19 | transposed | |
Clacu09g1185 | Clacu-Chr9:11613214 | Clacu08g1291 | Clacu-Chr8:22829926 | 3.80E-47 | transposed | |
Clacu01g1873 | Clacu-Chr1:30872087 | Clacu08g1291 | Clacu-Chr8:22829926 | 1.40E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48184 | PF00010 | HLH | 4.30E-10 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g1291 | - | - | - | 0.0 |