Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu08g1304 | ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCTCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTAGTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA | 741 | 50.88 | MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSSRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22955505 | 22956245 | - | ClG42_08g0130400.10 | Clacu08g1304 | 255646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu08g1304 | 246 | MobiDBLite | consensus disorder prediction | 149 | 182 | - | - | |
Clacu08g1304 | 246 | Gene3D | - | 167 | 244 | - | - | |
Clacu08g1304 | 246 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Clacu08g1304 | 246 | FunFam | Zinc-finger homeodomain protein 2 | 176 | 244 | - | - | |
Clacu08g1304 | 246 | MobiDBLite | consensus disorder prediction | 20 | 53 | - | - | |
Clacu08g1304 | 246 | NCBIfam | homeobox domain, ZF-HD class | 183 | 239 | IPR006455 | - | |
Clacu08g1304 | 246 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 56 | 105 | IPR006456 | - | |
Clacu08g1304 | 246 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 36 | 241 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Clacu08g1304 | 246 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 55 | 105 | IPR006456 | - | |
Clacu08g1304 | 246 | SUPERFAMILY | Homeodomain-like | 169 | 244 | IPR009057 | - | |
Clacu08g1304 | 246 | Pfam | ZF-HD protein dimerisation region | 54 | 106 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g2019 | Clacu-Chr1:32094834 | Clacu08g1304 | Clacu-Chr8:22955505 | 5.80E-41 | dispersed | |
Clacu08g1304 | Clacu-Chr8:22955505 | Clacu11g0158 | Clacu-Chr11:1184217 | 4.40E-46 | dispersed | |
Clacu01g1917 | Clacu-Chr1:31270011 | Clacu08g1304 | Clacu-Chr8:22955505 | 3.00E-52 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48185 | PF04770 | ZF-HD_dimer | 4.90E-30 | No_clan | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu08g1304 | - | - | - | 0.0 |