Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu08g1304 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCTCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTAGTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATACTTTGGGGAAGAAACCCTAA 741 50.88 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSSRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22955505 22956245 - ClG42_08g0130400.10 Clacu08g1304 255646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu08g1304 246 MobiDBLite consensus disorder prediction 149 182 - -
Clacu08g1304 246 Gene3D - 167 244 - -
Clacu08g1304 246 MobiDBLite consensus disorder prediction 1 54 - -
Clacu08g1304 246 FunFam Zinc-finger homeodomain protein 2 176 244 - -
Clacu08g1304 246 MobiDBLite consensus disorder prediction 20 53 - -
Clacu08g1304 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
Clacu08g1304 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Clacu08g1304 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 241 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Clacu08g1304 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Clacu08g1304 246 SUPERFAMILY Homeodomain-like 169 244 IPR009057 -
Clacu08g1304 246 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g2019 Clacu-Chr1:32094834 Clacu08g1304 Clacu-Chr8:22955505 5.80E-41 dispersed
Clacu08g1304 Clacu-Chr8:22955505 Clacu11g0158 Clacu-Chr11:1184217 4.40E-46 dispersed
Clacu01g1917 Clacu-Chr1:31270011 Clacu08g1304 Clacu-Chr8:22955505 3.00E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48185 PF04770 ZF-HD_dimer 4.90E-30 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu08g1304 - - - 0.0